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Report for CCDS54463.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54463.1 Public Homo sapiens 20 DHX35 24 110 108 CCDS HistoryNCBI Gene:60625Re-query CCDS DB by CCDS ID:54463.1Re-query CCDS DB by GeneID:60625See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54463.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373323.8 ENSP00000362420.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373323.8Link to Ensembl Protein Viewer:ENSP00000362420.3Re-query CCDS DB by Nucleotide ID:ENST00000373323Re-query CCDS DB by Protein ID:ENSP00000362420
Original member Current member NCBI NM_001190809.2 NP_001177738.1 Accepted alive Link to Nucleotide Sequence:NM_001190809.2Link to Protein Sequence:NP_001177738.1Re-query CCDS DB by Nucleotide ID:NM_001190809Re-query CCDS DB by Protein ID:NP_001177738Link to BLAST:NP_001177738.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177738.1 672 Q9H5Z1-2 672 100% 0 0

Chromosomal Locations for CCDS 54463.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 38962368 38962407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38969081 38969214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38983699 38983776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38988813 38988917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38991454 38991515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38992356 38992425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38994821 38994880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 39001730 39001842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 39002772 39002868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 39003749 39003907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 39006146 39006356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 39010280 39010404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 39014880 39014934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 39018804 39018899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 39021841 39021935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 39023690 39023767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 39025230 39025359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 39028418 39028499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 39030704 39030775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 39034206 39034317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 39038499 39038543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2019 nt):
ATGGCTGCGCCCGTGGGACCGGTGAAGTTCTGGCGACCCGGTACAGAGGGGCCAGGTGTAAGCATCTCTG
AAGAGAGACAAAGTCTGGCTGAAAACTCTGGGACAACGGTTGTTTACAACCCTTATGCTGCCCTTTCCAT
AGAGCAGCAGAGGCAGAAGCTGCCGGTATTCAAGTACCTTGCAGAAGCCGGCTGGACAGCTGAAGGAAGA
GTGGTAGGAGTGACCCAGCCTCGAAGAGTGGCTGCTGTTACAGTTGCAGGGAGAGTAGCTGAAGAAAGGG
GTGCAGTGCTGGGCCACGAGGTGGGCTACTGCATCCGCTTTGATGACTGCACCGACCAGCTGGCCACGAG
AATTAAGTTTCTTACTGATGGAATGCTGGTCAGGGAAATGATGGTTGATCCGTTGTTAACAAAATATAGT
GTCATCATGCTGGATGAAGCCCACGAGAGGACCTTGTACACTGACATTGCCATTGGCTTGCTAAAAAAGA
TTCAGAAAAAGCGAGGGGATCTTCGATTGATTGTAGCTTCAGCCACTCTGGATGCAGACAAATTCCGGGA
TTTCTTTAATCAAAATGAAACCAGTGATCCAGCAAGGGATACATGTGTGATCCTTACAGTGGAAGGGAGA
ACATTTCCGGTGGATATCTTTTATCTACAAAGTCCTGTTCCAGATTATATCAAATCAACTGTCGAAACTG
TGGTGAAAATTCACCAGACAGAGGGAGACGGAGACGTTTTAGCATTTCTTACTGGCCAGGAAGAGGTAGA
AACTGTTGTGTCGATGCTCATCGAGCAGGCTCGAGCACTAGCTCGCACTGGGATGAAGAGACACCTCCGA
GTTCTCCCCATGTATGCAGGACTGCCTTCCTTTGAGCAAATGAAAGTGTTTGAAAGGGTGTCACGCAGTG
TCAGAAAGGTGATAGTGGCCACCAATGTGGCAGAAACCTCTATCACAATCAGCGGCATTGTGTATGTGAT
CGACTGTGGCTTTGTGAAACTCCGAGCCTACAATCCCAGGACAGCTATTGAATGCTTGGTGGTGGTGCCA
GTCTCCCAGGCATCAGCTAATCAGCGAGCAGGACGTGGTGGTCGTAGTCGCTCGGGAAAATGTTATCGCC
TTTATACAGAGGAAGCCTTTGACAAGTTGCCTCAGTCTACGGTTCCTGAGATGCAGCGTAGTAATTTGGC
ACCTGTCATCCTGCAGCTGAAAGCACTAGGAATTGACAATGTCCTCAGGTTCCACTTCATGTCGCCCCCT
CCAGCACAGTCGATGGTTCAAGCCTTGGAGTTACTGTATGCTCTGGGAGGTCTGGACAAAGACTGTCGCC
TAACTGAACCGCTTGGCATGAGAATTGCAGAGTTTCCTTTGAATCCCATGTTTGCCAAAATGCTGCTTGA
ATCAGGAAACTTCGGCTGTTCTCAGGAAATTCTAAGCATCGCTGCCATGATGCAGATCCAGAATATCTTT
GTGGTCCCCCCAAACCAGAAGTCTCACGCAATTCGAGTGCACCGTAAATTTGCTGTGGAGGAGGGCGACC
ACCTCACTATGCTCAATATATATGAAGCATTTATCAAACACAATAAGGACTCTAAATGGTGTCAGGAACA
TTTCCTGAATTACAAGGGTCTTGTCAGAGCTGCGACTGTAAGAGAACAATTGAAAAAGCTTCTTGTCAAG
TTTCAAGTGCCCAGGAAGTCTAGTGAAGGTGACCCGGATCTGGTTCTGAGGTGCATTGTCTCCGGCTTCT
TCGCCAATGCAGCGAGGTTTCATTCTACTGGAGCTTATAGGACCATCCGTGATGACCATGAGCTGCACAT
ACACCCTGCGTCAGTCCTCTATGCAGAGAAGCCGCCTCGCTGGGTCATCTATAACGAAGTTATACAGACC
TCCAAGTACTACATGAGAGATGTGACTGCCATTGAATCGGCCTGGCTGTTGGAGCTGGCTCCACACTTTT
ATCAACAAGGAACGCACCTGTCTCTGAAAGCCAAAAGGGCCAAGGTCCAGGACCCGTGA

Translation (672 aa):
MAAPVGPVKFWRPGTEGPGVSISEERQSLAENSGTTVVYNPYAALSIEQQRQKLPVFKYLAEAGWTAEGR
VVGVTQPRRVAAVTVAGRVAEERGAVLGHEVGYCIRFDDCTDQLATRIKFLTDGMLVREMMVDPLLTKYS
VIMLDEAHERTLYTDIAIGLLKKIQKKRGDLRLIVASATLDADKFRDFFNQNETSDPARDTCVILTVEGR
TFPVDIFYLQSPVPDYIKSTVETVVKIHQTEGDGDVLAFLTGQEEVETVVSMLIEQARALARTGMKRHLR
VLPMYAGLPSFEQMKVFERVSRSVRKVIVATNVAETSITISGIVYVIDCGFVKLRAYNPRTAIECLVVVP
VSQASANQRAGRGGRSRSGKCYRLYTEEAFDKLPQSTVPEMQRSNLAPVILQLKALGIDNVLRFHFMSPP
PAQSMVQALELLYALGGLDKDCRLTEPLGMRIAEFPLNPMFAKMLLESGNFGCSQEILSIAAMMQIQNIF
VVPPNQKSHAIRVHRKFAVEEGDHLTMLNIYEAFIKHNKDSKWCQEHFLNYKGLVRAATVREQLKKLLVK
FQVPRKSSEGDPDLVLRCIVSGFFANAARFHSTGAYRTIRDDHELHIHPASVLYAEKPPRWVIYNEVIQT
SKYYMRDVTAIESAWLLELAPHFYQQGTHLSLKAKRAKVQDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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