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Report for CCDS2839.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2839.1 Public Homo sapiens 3 PCBP4 24 110 108 CCDS HistoryNCBI Gene:57060Re-query CCDS DB by CCDS ID:2839.1Re-query CCDS DB by GeneID:57060See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2839.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000322099.11 ENSP00000322341.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000322099.11Link to Ensembl Protein Viewer:ENSP00000322341.7Re-query CCDS DB by Nucleotide ID:ENST00000322099Re-query CCDS DB by Protein ID:ENSP00000322341
Original member Current member EBI ENST00000355852.6 ENSP00000348111.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000355852.6Link to Ensembl Protein Viewer:ENSP00000348111.2Re-query CCDS DB by Nucleotide ID:ENST00000355852Re-query CCDS DB by Protein ID:ENSP00000348111
Original member Current member EBI ENST00000461554.6 ENSP00000417196.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000461554.6Link to Ensembl Protein Viewer:ENSP00000417196.1Re-query CCDS DB by Nucleotide ID:ENST00000461554Re-query CCDS DB by Protein ID:ENSP00000417196
Original member Current member NCBI NM_001174100.2 NP_001167571.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001174100.2Link to Protein Sequence:NP_001167571.1Re-query CCDS DB by Nucleotide ID:NM_001174100Re-query CCDS DB by Protein ID:NP_001167571Link to BLAST:NP_001167571.1
Original member Current member NCBI NM_033008.3 NP_127501.1 Accepted alive Link to Nucleotide Sequence:NM_033008.3Link to Protein Sequence:NP_127501.1Re-query CCDS DB by Nucleotide ID:NM_033008Re-query CCDS DB by Protein ID:NP_127501Link to BLAST:NP_127501.1
Original member Current member NCBI NM_033010.2 NP_127503.1 Accepted alive Link to Nucleotide Sequence:NM_033010.2Link to Protein Sequence:NP_127503.1Re-query CCDS DB by Nucleotide ID:NM_033010Re-query CCDS DB by Protein ID:NP_127503Link to BLAST:NP_127503.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001167571.1 403 P57723-1 403 100% 0 0
NP_127501.1 403 P57723-1 403 100% 0 0
NP_127503.1 403 P57723-1 403 100% 0 0

Chromosomal Locations for CCDS 2839.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 51958061 51958349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51958790 51958959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51959047 51959099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51959229 51959292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51959367 51959411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51959577 51959651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51959895 51960023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51960189 51960320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51960526 51960642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51960866 51960898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51961010 51961033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51961160 51961240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGAGCGGCTCGGACGGGGGACTGGAGGAGGAGCCAGAGCTCAGCATCACCCTCACGCTGCGGATGCTGA
TGCACGGGAAGGAAGTGGGCAGCATCATCGGGAAGAAGGGCGAGACTGTAAAGCGAATCCGGGAGCAGAG
CAGTGCCCGGATCACCATCTCCGAGGGCTCCTGCCCTGAACGCATCACCACCATCACCGGGTCTACAGCA
GCTGTCTTCCATGCAGTCTCCATGATTGCTTTCAAACTGGATGAGGACCTTTGTGCTGCTCCTGCAAATG
GTGGAAATGTCTCCAGGCCTCCAGTGACCCTGCGCCTTGTCATCCCTGCCAGTCAGTGTGGCTCACTGAT
TGGGAAGGCTGGCACCAAGATCAAGGAGATCCGAGAGACTACGGGTGCCCAGGTACAGGTGGCAGGGGAC
CTGCTCCCCAACTCCACAGAGCGAGCTGTTACGGTATCTGGGGTGCCTGATGCCATCATCCTGTGTGTGC
GCCAGATCTGCGCTGTTATCCTGGAGTCCCCACCCAAAGGAGCCACTATCCCCTACCATCCGAGCCTCTC
CCTAGGTACTGTTCTTCTCTCTGCCAACCAGGGCTTCTCTGTCCAGGGTCAGTATGGGGCTGTGACCCCA
GCTGAGGTCACCAAGCTCCAGCAGCTCTCAAGCCATGCGGTCCCCTTTGCCACACCCAGCGTGGTGCCAG
GACTGGATCCCGGCACACAGACCAGCTCACAGGAGTTCTTGGTTCCCAACGATTTGATTGGCTGTGTGAT
CGGGCGCCAGGGCAGCAAGATCAGCGAGATCCGGCAGATGTCAGGGGCACATATCAAGATCGGGAACCAA
GCAGAGGGCGCTGGGGAGCGGCATGTCACCATCACTGGCTCTCCGGTCTCCATCGCCCTGGCCCAGTACC
TCATCACTGCCTGTCTAGAGACGGCCAAGTCTACCTCTGGGGGGACGCCCAGCTCGGCCCCCGCAGACCT
GCCTGCCCCCTTCTCGCCACCCCTGACGGCCCTGCCCACAGCTCCCCCTGGCCTGCTGGGCACACCCTAT
GCCATCTCCCTCTCCAACTTCATCGGCCTCAAGCCCATGCCCTTCTTGGCTTTACCACCTGCTTCCCCAG
GGCCGCCGCCGGGCTTGGCGGCCTACACTGCCAAGATGGCAGCAGCTAATGGGAGCAAGAAGGCTGAGCG
GCAGAAATTCTCCCCCTACTGA

Translation (403 aa):
MSGSDGGLEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTA
AVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGD
LLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTP
AEVTKLQQLSSHAVPFATPSVVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQ
AEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPY
AISLSNFIGLKPMPFLALPPASPGPPPGLAAYTAKMAAANGSKKAERQKFSPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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