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Report for CCDS4898.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4898.1 Public Homo sapiens 6 TJAP1 24 110 108 CCDS HistoryNCBI Gene:93643Re-query CCDS DB by CCDS ID:4898.1Re-query CCDS DB by GeneID:93643See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4898.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000259751.5 ENSP00000259751.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000259751.5Link to Ensembl Protein Viewer:ENSP00000259751.1Re-query CCDS DB by Nucleotide ID:ENST00000259751Re-query CCDS DB by Protein ID:ENSP00000259751
Original member Current member EBI ENST00000372444.6 ENSP00000361521.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372444.6Link to Ensembl Protein Viewer:ENSP00000361521.2Re-query CCDS DB by Nucleotide ID:ENST00000372444Re-query CCDS DB by Protein ID:ENSP00000361521
Original member Current member EBI ENST00000372452.5 ENSP00000361530.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372452.5Link to Ensembl Protein Viewer:ENSP00000361530.1Re-query CCDS DB by Nucleotide ID:ENST00000372452Re-query CCDS DB by Protein ID:ENSP00000361530
Original member Current member EBI ENST00000436109.6 ENSP00000407080.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000436109.6Link to Ensembl Protein Viewer:ENSP00000407080.2Re-query CCDS DB by Nucleotide ID:ENST00000436109Re-query CCDS DB by Protein ID:ENSP00000407080
Original member Current member NCBI NM_001146018.2 NP_001139490.1 Accepted alive Link to Nucleotide Sequence:NM_001146018.2Link to Protein Sequence:NP_001139490.1Re-query CCDS DB by Nucleotide ID:NM_001146018Re-query CCDS DB by Protein ID:NP_001139490Link to BLAST:NP_001139490.1
Original member Current member NCBI NM_001146019.2 NP_001139491.1 Accepted alive Link to Nucleotide Sequence:NM_001146019.2Link to Protein Sequence:NP_001139491.1Re-query CCDS DB by Nucleotide ID:NM_001146019Re-query CCDS DB by Protein ID:NP_001139491Link to BLAST:NP_001139491.1
Original member Current member NCBI NM_001146020.2 NP_001139492.1 Accepted alive Link to Nucleotide Sequence:NM_001146020.2Link to Protein Sequence:NP_001139492.1Re-query CCDS DB by Nucleotide ID:NM_001146020Re-query CCDS DB by Protein ID:NP_001139492Link to BLAST:NP_001139492.1
Original member Current member NCBI NM_001350569.2 NP_001337498.1 Accepted alive Link to Nucleotide Sequence:NM_001350569.2Link to Protein Sequence:NP_001337498.1Re-query CCDS DB by Nucleotide ID:NM_001350569Re-query CCDS DB by Protein ID:NP_001337498Link to BLAST:NP_001337498.1
Original member Current member NCBI NM_001350570.2 NP_001337499.1 Accepted alive Link to Nucleotide Sequence:NM_001350570.2Link to Protein Sequence:NP_001337499.1Re-query CCDS DB by Nucleotide ID:NM_001350570Re-query CCDS DB by Protein ID:NP_001337499Link to BLAST:NP_001337499.1
Original member Current member NCBI NM_080604.3 NP_542171.2 Accepted alive Link to Nucleotide Sequence:NM_080604.3Link to Protein Sequence:NP_542171.2Re-query CCDS DB by Nucleotide ID:NM_080604Re-query CCDS DB by Protein ID:NP_542171Link to BLAST:NP_542171.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139490.1 547 Q5JTD0-2 547 100% 0 0
NP_001139491.1 547 Q5JTD0-2 547 100% 0 0
NP_001139492.1 547 Q5JTD0-2 547 100% 0 0
NP_001337498.1 547 Q5JTD0-2 547 100% 0 0
NP_001337499.1 547 Q5JTD0-2 547 100% 0 0
NP_542171.2 547 Q5JTD0-2 547 100% 0 0

Chromosomal Locations for CCDS 4898.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 43499002 43499100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43500744 43500772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43501526 43501687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43502283 43502349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43503401 43503508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43503623 43503706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43504761 43505855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1644 nt):
ATGACTAGTGCCGCCCCTGCTAAGAAACCCTACCGTAAGGCACCACCAGAGCATCGGGAGCTGCGTTTGG
AAATTCCTGGATCCCGGCTTGAGCAGGAGGAACCCCTGACTGATGCAGAAAGGATGAAGCTCTTACAGGA
GGAGAATGAAGAGCTTCGCCGGCGCCTGGCCTCCGCCACCAGACGCACTGAGGCCCTGGAACGTGAGCTG
GAAATTGGGCAGGACTGCCTGGAGCTGGAGCTGGGCCAGAGCCGCGAGGAGCTGGACAAATTTAAGGATA
AGTTCCGCAGGCTGCAGAACAGCTACACGGCTTCCCAGCGGACCAACCAGGAGTTGGAGGACAAGCTGCA
CACACTGATCAAGAAGGCTGAGATGGATAGGAAGACGCTGGACTGGGAGATTGTGGAGCTGACCAACAAG
CTGCTGGATGCCAAGAACACCATCAACAAGCTGGAAGAGCTCAATGAGCGGTACCGGCTGGACTGCAACC
TGGCTGTACAGCTCCTCAAGTGCAACAAGTCCCACTTCCGAAACCACAAGTTTGCCGATCTGCCCTGTGA
GCTACAGGACATGGTTCGGAAACATTTGCACAGTGGTCAAGAGGCCGCCAGCCCAGGTCCTGCTCCCAGC
CTAGCCCCAGGGGCTGTGGTGCCTACCTCAGTCATTGCCCGAGTGTTAGAGAAGCCGGAGTCTCTACTGC
TCAATTCAGCCCAGTCAGGCAGCGCCGGGCGCCCCTTGGCTGAGGATGTCTTTGTGCATGTGGACATGAG
TGAGGGTGTCCCAGGTGATCCAGCCAGTCCCCCGGCCCCTGGCAGCCCCACCCCACAACCCAATGGGGAG
TGCCACTCTCTGGGTACTGCCAGGGGCTCCCCGGAGGAAGAGCTGCCCCTGCCAGCCTTTGAGAAGCTGA
ACCCCTACCCAACCCCGTCTCCACCACACCCACTGTATCCTGGCCGCAGGGTAATAGAGTTCTCTGAGGA
TAAGGTTCGGATCCCCCGCAACAGCCCCCTGCCCAACTGCACTTACGCTACCCGCCAGGCCATTTCCCTG
AGCCTGGTAGAGGAGGGGAGTGAGCGGGCCCGCCCCAGCCCAGTGCCCAGCACCCCTGCCTCAGCCCAGG
CCTCACCCCACCACCAGCCCAGCCCAGCACCCCTAACACTCAGTGCCCCAGCTAGCTCTGCCAGCTCTGA
AGAGGACCTGCTGGTCAGCTGGCAGCGGGCATTTGTGGACCGTACTCCACCACCTGCTGCTGTGGCCCAG
CGCACAGCCTTTGGACGCGATGCCCTCCCTGAGCTGCAGCGCCATTTTGCCCATAGCCCCGCTGACAGAG
ATGAGGTGGTCCAGGCACCTTCTGCCCGACCCGAAGAGAGTGAGCTTTTGCTACCCACAGAACCTGACTC
TGGCTTTCCCAGGGAGGAAGAAGAGCTGAACCTGCCTATCAGTCCTGAGGAAGAGCGCCAGAGCCTGCTG
CCCATTAACAGGGGCACAGAGGAGGGGCCAGGCACTTCCCACACCGAGGGCAGGGCCTGGCCACTCCCCA
GCTCCAGTCGCCCCCAGCGCAGCCCCAAGAGGATGGGGGTTCACCACCTGCACCGCAAGGACAGCCTGAC
CCAGGCCCAGGAGCAGGGCAACCTGCTCAACTAG

Translation (547 aa):
MTSAAPAKKPYRKAPPEHRELRLEIPGSRLEQEEPLTDAERMKLLQEENEELRRRLASATRRTEALEREL
EIGQDCLELELGQSREELDKFKDKFRRLQNSYTASQRTNQELEDKLHTLIKKAEMDRKTLDWEIVELTNK
LLDAKNTINKLEELNERYRLDCNLAVQLLKCNKSHFRNHKFADLPCELQDMVRKHLHSGQEAASPGPAPS
LAPGAVVPTSVIARVLEKPESLLLNSAQSGSAGRPLAEDVFVHVDMSEGVPGDPASPPAPGSPTPQPNGE
CHSLGTARGSPEEELPLPAFEKLNPYPTPSPPHPLYPGRRVIEFSEDKVRIPRNSPLPNCTYATRQAISL
SLVEEGSERARPSPVPSTPASAQASPHHQPSPAPLTLSAPASSASSEEDLLVSWQRAFVDRTPPPAAVAQ
RTAFGRDALPELQRHFAHSPADRDEVVQAPSARPEESELLLPTEPDSGFPREEEELNLPISPEEERQSLL
PINRGTEEGPGTSHTEGRAWPLPSSSRPQRSPKRMGVHHLHRKDSLTQAQEQGNLLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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