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Report for CCDS8701.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8701.1 Public Homo sapiens 12 IRAG2 24 110 108 CCDS HistoryNCBI Gene:4033Re-query CCDS DB by CCDS ID:8701.1Re-query CCDS DB by GeneID:4033See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8701.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354454.7 ENSP00000346442.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000354454.7Link to Ensembl Protein Viewer:ENSP00000346442.3Re-query CCDS DB by Nucleotide ID:ENST00000354454Re-query CCDS DB by Protein ID:ENSP00000346442
Original member Current member EBI ENST00000548766.5 ENSP00000446496.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000548766.5Link to Ensembl Protein Viewer:ENSP00000446496.1Re-query CCDS DB by Nucleotide ID:ENST00000548766Re-query CCDS DB by Protein ID:ENSP00000446496
Original member Current member EBI ENST00000547044.5 ENSP00000450246.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000547044.5Link to Ensembl Protein Viewer:ENSP00000450246.1Re-query CCDS DB by Nucleotide ID:ENST00000547044Re-query CCDS DB by Protein ID:ENSP00000450246
Original member Current member EBI ENST00000556887.6 ENSP00000451048.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000556887.6Link to Ensembl Protein Viewer:ENSP00000451048.2Re-query CCDS DB by Nucleotide ID:ENST00000556887Re-query CCDS DB by Protein ID:ENSP00000451048
Original member Current member EBI ENST00000557489.6 ENSP00000452116.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000557489.6Link to Ensembl Protein Viewer:ENSP00000452116.2Re-query CCDS DB by Nucleotide ID:ENST00000557489Re-query CCDS DB by Protein ID:ENSP00000452116
Original member Current member NCBI NM_001204126.2 NP_001191055.1 Accepted alive Link to Nucleotide Sequence:NM_001204126.2Link to Protein Sequence:NP_001191055.1Re-query CCDS DB by Nucleotide ID:NM_001204126Re-query CCDS DB by Protein ID:NP_001191055Link to BLAST:NP_001191055.1
Original member Current member NCBI NM_001204127.2 NP_001191056.1 Accepted alive Link to Nucleotide Sequence:NM_001204127.2Link to Protein Sequence:NP_001191056.1Re-query CCDS DB by Nucleotide ID:NM_001204127Re-query CCDS DB by Protein ID:NP_001191056Link to BLAST:NP_001191056.1
Original member Current member NCBI NM_001366540.1 NP_001353469.1 Accepted alive Link to Nucleotide Sequence:NM_001366540.1Link to Protein Sequence:NP_001353469.1Re-query CCDS DB by Nucleotide ID:NM_001366540Re-query CCDS DB by Protein ID:NP_001353469Link to BLAST:NP_001353469.1
Original member Current member NCBI NM_001366541.2 NP_001353470.1 Accepted alive Link to Nucleotide Sequence:NM_001366541.2Link to Protein Sequence:NP_001353470.1Re-query CCDS DB by Nucleotide ID:NM_001366541Re-query CCDS DB by Protein ID:NP_001353470Link to BLAST:NP_001353470.1
Original member Current member NCBI NM_001366542.2 NP_001353471.1 Accepted alive Link to Nucleotide Sequence:NM_001366542.2Link to Protein Sequence:NP_001353471.1Re-query CCDS DB by Nucleotide ID:NM_001366542Re-query CCDS DB by Protein ID:NP_001353471Link to BLAST:NP_001353471.1
Original member Current member NCBI NM_001366543.2 NP_001353472.1 Accepted alive Link to Nucleotide Sequence:NM_001366543.2Link to Protein Sequence:NP_001353472.1Re-query CCDS DB by Nucleotide ID:NM_001366543Re-query CCDS DB by Protein ID:NP_001353472Link to BLAST:NP_001353472.1
Original member Current member NCBI NM_001366544.2 NP_001353473.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001366544.2Link to Protein Sequence:NP_001353473.1Re-query CCDS DB by Nucleotide ID:NM_001366544Re-query CCDS DB by Protein ID:NP_001353473Link to BLAST:NP_001353473.1
Original member Current member NCBI NM_001366545.2 NP_001353474.1 Accepted alive Link to Nucleotide Sequence:NM_001366545.2Link to Protein Sequence:NP_001353474.1Re-query CCDS DB by Nucleotide ID:NM_001366545Re-query CCDS DB by Protein ID:NP_001353474Link to BLAST:NP_001353474.1
Original member Current member NCBI NM_001366546.2 NP_001353475.1 Accepted alive Link to Nucleotide Sequence:NM_001366546.2Link to Protein Sequence:NP_001353475.1Re-query CCDS DB by Nucleotide ID:NM_001366546Re-query CCDS DB by Protein ID:NP_001353475Link to BLAST:NP_001353475.1
Original member Current member NCBI NM_001366547.2 NP_001353476.1 Accepted alive Link to Nucleotide Sequence:NM_001366547.2Link to Protein Sequence:NP_001353476.1Re-query CCDS DB by Nucleotide ID:NM_001366547Re-query CCDS DB by Protein ID:NP_001353476Link to BLAST:NP_001353476.1
Original member Current member NCBI NM_006152.4 NP_006143.2 Accepted alive Link to Nucleotide Sequence:NM_006152.4Link to Protein Sequence:NP_006143.2Re-query CCDS DB by Nucleotide ID:NM_006152Re-query CCDS DB by Protein ID:NP_006143Link to BLAST:NP_006143.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191055.1 499 Q12912-2 499 100% 0 0
NP_001191056.1 499 Q12912-2 499 100% 0 0
NP_001353469.1 499 Q12912-2 499 100% 0 0
NP_001353470.1 499 Q12912-2 499 100% 0 0
NP_001353471.1 499 Q12912-2 499 100% 0 0
NP_001353472.1 499 Q12912-2 499 100% 0 0
NP_001353473.1 499 Q12912-2 499 100% 0 0
NP_001353474.1 499 Q12912-2 499 100% 0 0
NP_001353475.1 499 Q12912-2 499 100% 0 0
NP_001353476.1 499 Q12912-2 499 100% 0 0
NP_006143.2 499 Q12912-2 499 100% 0 0

Chromosomal Locations for CCDS 8701.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 25069408 25069431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25079244 25079290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25079398 25079462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25079656 25079763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25083423 25083493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25088100 25088157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25089614 25089677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25089763 25089790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25090057 25090197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25096910 25097044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25101178 25101325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25102198 25102241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25103837 25103899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25104009 25104058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25104361 25104462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25106943 25107050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25107817 25108060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1500 nt):
ATGAATGATGACCCAAGTATGGAAGAGAATGGTGTTGAACGCGTGTGTCCTGAGAGCCTGCTGCAGTCCA
GGGAATATTCCTCACTACCATTACCCAGACACACTTCATCGACAGACGGTACTATAACTTCAAGTGATCC
TGGATTAGAAATTCTGAATATGGCTTCTTGTGACCTTGACAGAAACTCGCTCTGTAAGAAAGAGGAGGAT
ACAAGATCAGCTTCTCCCACGATAGAGGCCCAAGGCACAAGTCCAGCTCATGATAATATTGCATTCCAAG
ACTCTACGAGTAAGGATAAAACCATATTAAATCTGGAAGCCAAAGAGGAACCAGAAACAATAGAAGAACA
TAAAAAAGAACATGCTTCAGGAGACTCTGTGGTTTCCCCTCTTCCTGTAACCACTGTGAAATCGGTTAAC
CTTAGACAAAGTGAGAACACTTCTGCTAATGAGAAGGAGGTGGAGGCAGAATTTCTCAGATTATCTTTGG
GATTTAAGTGTGACTGGTTTACCTTGGAGAAGAGAGTGAAGCTTGAAGAGAGGTCCCGTGACTTGGCAGA
AGAAAATTTGAAGAAAGAAATCACTAACTGTTTAAAACTATTAGAGTCTTTAACACCTCTGTGTGAAGAT
GACAACCAGGCACAGGAAATCATTAAGAAGCTGGAGAAGAGTATAAAGTTTCTTAGCCAGTGTGCAGCAC
GAGTGGCCAGTAGGGCTGAGATGTTGGGAGCCATCAATCAGGAAAGCCGGGTTAGTAAAGCAGTTGAAGT
GATGATTCAGCACGTAGAAAACTTGAAGAGGATGTATGCCAAAGAGCACGCTGAATTAGAAGAACTGAAA
CAGGTTCTTCTGCAGAATGAAAGGTCTTTCAATCCTCTTGAAGATGATGATGACTGCCAAATTAAAAAAC
GTTCAGCTTCTCTAAACTCCAAGCCATCTTCTCTACGAAGAGTGACTATTGCCTCTTTACCCAGAAATAT
TGGAAATGCAGGAATGGTGGCTGGGATGGAAAATAATGATCGATTCAGTAGAAGGTCAAGCAGTTGGCGT
ATTTTGGGGTCAAAGCAGAGTGAACACCGTCCCTCATTACCTCGATTTATTAGCACCTATTCCTGGGCAG
ATGCTGAAGAAGAAAAATGTGAACTAAAAACTAAAGATGACTCAGAGCCATCTGGAGAAGAAACAGTAGA
AAGGACAAGGAAGCCAAGTCTTTCTGAAAAGAAAAATAATCCATCAAAGTGGGATGTCTCTTCAGTTTAT
GACACAATAGCTTCCTGGGCAACAAATCTCAAGTCCTCCATCAGAAAGGCTAATAAGGCCCTCTGGCTCT
CTATTGCATTCATTGTACTGTTTGCAGCTTTGATGAGCTTCCTCACAGGCCAATTATTCCAGAAGTCTGT
GGATGCCGCTCCCACACAGCAAGAGGACTCATGGACGTCTCTAGAACATATCTTGTGGCCATTTACCAGA
CTCCGACACAATGGGCCACCACCAGTGTGA

Translation (499 aa):
MNDDPSMEENGVERVCPESLLQSREYSSLPLPRHTSSTDGTITSSDPGLEILNMASCDLDRNSLCKKEED
TRSASPTIEAQGTSPAHDNIAFQDSTSKDKTILNLEAKEEPETIEEHKKEHASGDSVVSPLPVTTVKSVN
LRQSENTSANEKEVEAEFLRLSLGFKCDWFTLEKRVKLEERSRDLAEENLKKEITNCLKLLESLTPLCED
DNQAQEIIKKLEKSIKFLSQCAARVASRAEMLGAINQESRVSKAVEVMIQHVENLKRMYAKEHAELEELK
QVLLQNERSFNPLEDDDDCQIKKRSASLNSKPSSLRRVTIASLPRNIGNAGMVAGMENNDRFSRRSSSWR
ILGSKQSEHRPSLPRFISTYSWADAEEEKCELKTKDDSEPSGEETVERTRKPSLSEKKNNPSKWDVSSVY
DTIASWATNLKSSIRKANKALWLSIAFIVLFAALMSFLTGQLFQKSVDAAPTQQEDSWTSLEHILWPFTR
LRHNGPPPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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