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Report for CCDS43313.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43313.1 Public Homo sapiens 5 ZNF131 24 110 108 CCDS HistoryNCBI Gene:7690Re-query CCDS DB by CCDS ID:43313.1Re-query CCDS DB by GeneID:7690See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43313.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306938.8 ENSP00000305804.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000306938.8Link to Ensembl Protein Viewer:ENSP00000305804.4Re-query CCDS DB by Nucleotide ID:ENST00000306938Re-query CCDS DB by Protein ID:ENSP00000305804
Original member Current member EBI ENST00000509634.5 ENSP00000421246.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000509634.5Link to Ensembl Protein Viewer:ENSP00000421246.1Re-query CCDS DB by Nucleotide ID:ENST00000509634Re-query CCDS DB by Protein ID:ENSP00000421246
Original member Current member EBI ENST00000505606.6 ENSP00000423945.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000505606.6Link to Ensembl Protein Viewer:ENSP00000423945.1Re-query CCDS DB by Nucleotide ID:ENST00000505606Re-query CCDS DB by Protein ID:ENSP00000423945
Original member Current member NCBI NM_001330706.2 NP_001317635.1 Accepted alive Link to Nucleotide Sequence:NM_001330706.2Link to Protein Sequence:NP_001317635.1Re-query CCDS DB by Nucleotide ID:NM_001330706Re-query CCDS DB by Protein ID:NP_001317635Link to BLAST:NP_001317635.1
Original member Current member NCBI NM_001330711.2 NP_001317640.1 Accepted alive Link to Nucleotide Sequence:NM_001330711.2Link to Protein Sequence:NP_001317640.1Re-query CCDS DB by Nucleotide ID:NM_001330711Re-query CCDS DB by Protein ID:NP_001317640Link to BLAST:NP_001317640.1
Original member Current member NCBI NM_001330713.2 NP_001317642.1 Accepted alive Link to Nucleotide Sequence:NM_001330713.2Link to Protein Sequence:NP_001317642.1Re-query CCDS DB by Nucleotide ID:NM_001330713Re-query CCDS DB by Protein ID:NP_001317642Link to BLAST:NP_001317642.1
Original member Current member NCBI NM_001330715.2 NP_001317644.1 Accepted alive Link to Nucleotide Sequence:NM_001330715.2Link to Protein Sequence:NP_001317644.1Re-query CCDS DB by Nucleotide ID:NM_001330715Re-query CCDS DB by Protein ID:NP_001317644Link to BLAST:NP_001317644.1
Original member Current member NCBI NM_001388319.1 NP_001375248.1 Accepted alive Link to Nucleotide Sequence:NM_001388319.1Link to Protein Sequence:NP_001375248.1Re-query CCDS DB by Nucleotide ID:NM_001388319Re-query CCDS DB by Protein ID:NP_001375248Link to BLAST:NP_001375248.1
Original member Current member NCBI NM_003432.4 NP_003423.1 Accepted alive Link to Nucleotide Sequence:NM_003432.4Link to Protein Sequence:NP_003423.1Re-query CCDS DB by Nucleotide ID:NM_003432Re-query CCDS DB by Protein ID:NP_003423Link to BLAST:NP_003423.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317635.1 589 P52739-2 589 100% 0 0
NP_001317640.1 589 P52739-2 589 100% 0 0
NP_001317642.1 589 P52739-2 589 100% 0 0
NP_001317644.1 589 P52739-2 589 100% 0 0
NP_001375248.1 589 P52739-2 589 100% 0 0
NP_003423.1 589 P52739-2 589 100% 0 0

Chromosomal Locations for CCDS 43313.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 43122054 43122177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43123209 43123310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43139165 43139309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43161249 43161606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43161709 43161931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43173318 43173448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43174447 43175133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1770 nt):
ATGGAGGCTGAAGAGACGATGGAATGCCTTCAGGAGTTCCCTGAACATCATAAAATGATCCTCGACCGAT
TGAATGAACAGCGAGAGCAGGACCGGTTTACTGACATCACCCTAATTGTCGACGGACACCATTTTAAGGC
TCACAAGGCTGTTTTGGCTGCTTGTAGTAAGTTCTTCTACAAATTCTTTCAGGAGTTTACCCAAGAACCA
TTGGTGGAGATAGAAGGTGTTAGTAAAATGGCCTTTCGCCATTTAATTGAGTTCACATATACAGCAAAAT
TAATGATACAAGGAGAAGAAGAAGCCAATGATGTATGGAAAGCAGCAGAGTTTCTACAAATGCTAGAAGC
TATCAAAGCCCTTGAAGTCAGGAACAAAGAAAACTCAGCTCCCTTAGAGGAAAATACCACAGGAAAAAAT
GAGGCCAAAAAAAGGAAGATTGCAGAAACTTCAAATGTTATCACTGAGTCATTGCCATCTGCAGAATCAG
AACCTGTTGAAATTGAGGTAGAGATTGCCGAAGGCACCATTGAAGTGGAAGATGAAGGCATCGAAACATT
AGAGGAAGTGGCTTCTGCCAAGCAGTCCGTAAAGTACATACAGAGCACAGGTTCCTCTGATGATTCTGCT
CTAGCACTGTTGGCAGATATTACCAGCAAGTACCGTCAAGGTGACAGAAAAGGGCAGATTAAAGAAGATG
GCTGTCCATCTGACCCCACGAGCAAACAGGAGCACATGAAATCACACTCCACTGAGAGTTTCAAGTGTGA
AATATGCAATAAACGATATCTTCGAGAGAGCGCATGGAAACAGCACCTAAATTGTTACCACCTTGAAGAA
GGTGGAGTCAGTAAGAAGCAAAGAACTGGGAAAAAAATTCATGTATGTCAGTACTGTGAGAAACAGTTTG
ACCATTTTGGACATTTTAAAGAACATCTTCGAAAACATACAGGTGAAAAACCTTTTGAATGTCCAAATTG
TCATGAACGATTTGCTAGAAATAGCACTCTGAAATGTCACCTCACTGCATGCCAAACTGGAGTAGGGGCA
AAAAAAGGAAGGAAGAAGCTCTACGAATGCCAGGTCTGCAACAGTGTGTTTAACAGCTGGGACCAGTTCA
AAGATCACTTGGTAATACACACTGGAGATAAACCCAACCATTGTACTTTATGTGATTTGTGGTTTATGCA
AGGAAATGAATTAAGGAGGCATCTCAGTGATGCTCACAATATTTCAGAGCGTCTAGTAACGGAAGAAGTT
CTTTCAGTAGAAACACGTGTGCAAACTGAACCTGTAACATCAATGACTATTATAGAACAAGTTGGGAAGG
TGCATGTGCTACCATTGCTTCAGGTTCAGGTGGATTCAGCACAAGTGACTGTGGAACAAGTCCATCCAGA
TCTGCTCCAGGACAGCCAGGTGCACGATTCACACATGAGTGAGCTTCCAGAGCAGGTCCAAGTGAGTTAT
CTAGAAGTGGGCCGAATTCAGACTGAAGAAGGTACTGAAGTACATGTAGAGGAGCTGCATGTTGAACGGG
TCAATCAAATGCCAGTGGAAGTACAAACTGAACTTCTAGAAGCAGATTTGGACCACGTGACCCCAGAAAT
CATGAACCAAGAGGAGAGAGAGTCTAGCCAAGCAGATGCTGCTGAGGCTGCCAGGGAAGATCACGAAGAT
GCTGAGGATTTAGAGACCAAGCCAACAGTGGATTCTGAAGCAGAAAAGGCAGAGAATGAGGACAGAACAG
CTCTGCCAGTTTTAGAATGA

Translation (589 aa):
MEAEETMECLQEFPEHHKMILDRLNEQREQDRFTDITLIVDGHHFKAHKAVLAACSKFFYKFFQEFTQEP
LVEIEGVSKMAFRHLIEFTYTAKLMIQGEEEANDVWKAAEFLQMLEAIKALEVRNKENSAPLEENTTGKN
EAKKRKIAETSNVITESLPSAESEPVEIEVEIAEGTIEVEDEGIETLEEVASAKQSVKYIQSTGSSDDSA
LALLADITSKYRQGDRKGQIKEDGCPSDPTSKQEHMKSHSTESFKCEICNKRYLRESAWKQHLNCYHLEE
GGVSKKQRTGKKIHVCQYCEKQFDHFGHFKEHLRKHTGEKPFECPNCHERFARNSTLKCHLTACQTGVGA
KKGRKKLYECQVCNSVFNSWDQFKDHLVIHTGDKPNHCTLCDLWFMQGNELRRHLSDAHNISERLVTEEV
LSVETRVQTEPVTSMTIIEQVGKVHVLPLLQVQVDSAQVTVEQVHPDLLQDSQVHDSHMSELPEQVQVSY
LEVGRIQTEEGTEVHVEELHVERVNQMPVEVQTELLEADLDHVTPEIMNQEERESSQADAAEAAREDHED
AEDLETKPTVDSEAEKAENEDRTALPVLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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