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Report for CCDS4922.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4922.2 Public Homo sapiens 6 ADGRF4 24 110 108 CCDS HistoryNCBI Gene:221393Re-query CCDS DB by CCDS ID:4922.2Re-query CCDS DB by GeneID:221393See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 4922.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000283303.3 ENSP00000283303.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000283303.3Link to Ensembl Protein Viewer:ENSP00000283303.2Re-query CCDS DB by Nucleotide ID:ENST00000283303Re-query CCDS DB by Protein ID:ENSP00000283303
Original member Current member EBI ENST00000327753.7 ENSP00000328319.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000327753.7Link to Ensembl Protein Viewer:ENSP00000328319.3Re-query CCDS DB by Nucleotide ID:ENST00000327753Re-query CCDS DB by Protein ID:ENSP00000328319
Original member Current member NCBI NM_001347855.2 NP_001334784.1 Accepted alive Link to Nucleotide Sequence:NM_001347855.2Link to Protein Sequence:NP_001334784.1Re-query CCDS DB by Nucleotide ID:NM_001347855Re-query CCDS DB by Protein ID:NP_001334784Link to BLAST:NP_001334784.1
Original member Current member NCBI NM_153838.5 NP_722580.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153838.5Link to Protein Sequence:NP_722580.3Re-query CCDS DB by Nucleotide ID:NM_153838Re-query CCDS DB by Protein ID:NP_722580Link to BLAST:NP_722580.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334784.1 695 Q8IZF3 695 100% 0 0
NP_722580.3 695 Q8IZF3 695 100% 0 0

Chromosomal Locations for CCDS 4922.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 47707246 47707338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47708224 47708278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47710735 47710886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47712357 47712608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47713798 47715177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47716806 47716847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47717292 47717351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47718389 47718442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2088 nt):
ATGAAAATGAAGTCCCAGGCAACCATGATTTGCTGCTTAGTGTTCTTTCTGTCCACAGAATGTTCCCACT
ATAGATCCAAGATTCACCTAAAAGCTGGAGATAAACTTCAAAGCCCTGAAGGGAAACCCAAGACTGGAAG
GATCCAAGAGAAATGCGAAGGACCTTGTATTTCTTCTTCCAACTGCAGCCAGCCCTGTGCTAAGGACTTT
CATGGAGAAATAGGATTTACATGTAATCAAAAAAAGTGGCAAAAATCAGCTGAAACATGTACAAGCCTTT
CTGTGGAAAAACTCTTTAAGGACTCAACTGGTGCATCTCGCCTTTCTGTAGCAGCACCATCTATACCTCT
GCATATTCTAGACTTTCGAGCTCCAGAGACCATTGAGAGTGTAGCTCAAGGAATCCGTAAGAACTGCCCC
TTTGATTATGCCTGCATCACTGACATGGTGAAATCATCAGAAACAACATCTGGAAATATTGCATTTATAG
TGGAGTTATTAAAAAATATTTCTACAGACTTGTCTGATAATGTTACTCGAGAGAAAATGAAGAGCTATAG
TGAAGTGGCCAACCACATCCTCGACACAGCAGCCATTTCAAACTGGGCTTTCATTCCCAACAAAAATGCC
AGCTCGGATTTGTTGCAGTCAGTGAATTTGTTTGCCAGACAACTCCACATCCACAATAATTCTGAGAACA
TTGTGAATGAACTCTTCATTCAGACAAAAGGGTTTCACATCAACCATAATACCTCAGAGAAAAGCCTCAA
TTTCTCCATGAGCATGAACAATACCACAGAAGATATCTTAGGAATGGTACAGATTCCCAGGCAAGAGCTA
AGGAAGCTGTGGCCAAATGCATCCCAAGCCATTAGCATAGCTTTCCCAACCTTGGGGGCTATCCTGAGAG
AAGCCCACTTGCAAAATGTGAGTCTTCCCAGACAGGTAAATGGTCTGGTGCTATCAGTGGTTTTACCAGA
AAGGTTGCAAGAAATCATACTCACCTTCGAAAAGATCAATAAAACCCGCAATGCCAGAGCCCAGTGTGTT
GGCTGGCACTCCAAGAAAAGGAGATGGGATGAGAAAGCGTGCCAAATGATGTTGGATATCAGGAACGAAG
TGAAATGCCGCTGTAACTACACCAGTGTGGTGATGTCTTTTTCCATTCTCATGTCCTCCAAATCGATGAC
CGACAAAGTTCTGGACTACATCACCTGCATTGGGCTCAGCGTCTCAATCCTAAGCTTGGTTCTTTGCCTG
ATCATTGAAGCCACAGTGTGGTCCCGGGTGGTTGTGACGGAGATATCATACATGCGTCACGTGTGCATCG
TGAATATAGCAGTGTCCCTTCTGACTGCCAATGTGTGGTTTATCATAGGCTCTCACTTTAACATTAAGGC
CCAGGACTACAACATGTGTGTTGCAGTGACATTTTTCAGCCACTTTTTCTACCTCTCTCTGTTTTTCTGG
ATGCTCTTCAAAGCATTGCTCATCATTTATGGAATATTGGTCATTTTCCGTAGGATGATGAAGTCCCGAA
TGATGGTCATTGGCTTTGCCATTGGCTATGGGTGCCCATTGATCATTGCTGTCACTACAGTTGCTATCAC
AGAGCCAGAGAAAGGCTACATGAGACCTGAGGCCTGTTGGCTTAACTGGGACAATACCAAAGCCCTTTTA
GCATTTGCCATCCCGGCGTTCGTCATTGTGGCTGTAAATCTGATTGTGGTTTTGGTTGTTGCTGTCAACA
CTCAGAGGCCCTCTATTGGCAGTTCCAAGTCTCAGGATGTGGTCATAATTATGAGGATCAGCAAAAATGT
TGCCATCCTCACTCCACTGCTGGGACTGACCTGGGGTTTTGGAATAGCCACTCTCATAGAAGGCACTTCC
TTGACGTTCCATATAATTTTTGCCTTGCTCAATGCTTTCCAGGGTTTTTTCATCCTGCTGTTTGGAACCA
TTATGGATCACAAGATAAGAGATGCTTTGAGGATGAGGATGTCTTCACTGAAGGGGAAATCGAGGGCAGC
TGAGAATGCATCACTAGGCCCAACCAATGGATCTAAATTAATGAATCGTCAAGGATGA

Translation (695 aa):
MKMKSQATMICCLVFFLSTECSHYRSKIHLKAGDKLQSPEGKPKTGRIQEKCEGPCISSSNCSQPCAKDF
HGEIGFTCNQKKWQKSAETCTSLSVEKLFKDSTGASRLSVAAPSIPLHILDFRAPETIESVAQGIRKNCP
FDYACITDMVKSSETTSGNIAFIVELLKNISTDLSDNVTREKMKSYSEVANHILDTAAISNWAFIPNKNA
SSDLLQSVNLFARQLHIHNNSENIVNELFIQTKGFHINHNTSEKSLNFSMSMNNTTEDILGMVQIPRQEL
RKLWPNASQAISIAFPTLGAILREAHLQNVSLPRQVNGLVLSVVLPERLQEIILTFEKINKTRNARAQCV
GWHSKKRRWDEKACQMMLDIRNEVKCRCNYTSVVMSFSILMSSKSMTDKVLDYITCIGLSVSILSLVLCL
IIEATVWSRVVVTEISYMRHVCIVNIAVSLLTANVWFIIGSHFNIKAQDYNMCVAVTFFSHFFYLSLFFW
MLFKALLIIYGILVIFRRMMKSRMMVIGFAIGYGCPLIIAVTTVAITEPEKGYMRPEACWLNWDNTKALL
AFAIPAFVIVAVNLIVVLVVAVNTQRPSIGSSKSQDVVIIMRISKNVAILTPLLGLTWGFGIATLIEGTS
LTFHIIFALLNAFQGFFILLFGTIMDHKIRDALRMRMSSLKGKSRAAENASLGPTNGSKLMNRQG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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