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Report for CCDS81936.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81936.1 Public Homo sapiens 16 AMDHD2 24 110 108 CCDS HistoryNCBI Gene:51005Re-query CCDS DB by CCDS ID:81936.1Re-query CCDS DB by GeneID:51005See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81936.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000293971.11 ENSP00000293971.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000293971.11Link to Ensembl Protein Viewer:ENSP00000293971.6Re-query CCDS DB by Nucleotide ID:ENST00000293971Re-query CCDS DB by Protein ID:ENSP00000293971
Original member Current member NCBI NM_001330449.2 NP_001317378.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001330449.2Link to Protein Sequence:NP_001317378.1Re-query CCDS DB by Nucleotide ID:NM_001330449Re-query CCDS DB by Protein ID:NP_001317378Link to BLAST:NP_001317378.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317378.1 409 Q9Y303-1 409 100% 0 0

Chromosomal Locations for CCDS 81936.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 2520459 2520541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2520769 2520905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2520984 2521123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2527561 2527615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2527773 2527985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2528060 2528148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2528236 2528380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2528452 2528559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2528650 2528718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2528994 2529095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2529475 2529563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1230 nt):
ATGCGCGGCGAGCAGGGCGCGGCGGGGGCCCGCGTGCTCCAGTTCACTAACTGCCGGATCCTGCGCGGAG
GGAAACTGCTCAGGGAGGATCTGTGGGTGCGCGGAGGCCGCATCTTGGACCCAGAGAAGCTGTTCTTTGA
GGAGCGGCGCGTGGCCGACGAGCGGCGGGACTGCGGGGGCCGCATCTTGGCTCCCGGATTCATCGACGTG
CAGATCAACGGTGGATTTGGTGTTGACTTCTCTCAAGCCACGGAGGACGTGGGTTCGGGGGTTGCCCTCG
TGGCCCGGAGGATCCTGTCGCACGGCGTCACCTCCTTCTGCCCCACCCTGGTCACTTCCCCACCGGAGGT
TTATCACAAGGTTGTTCCTCAGATCCCTGTGAAGAGTGGTGGTCCCCATGGGGCAGGGGTCCTCGGGCTG
CACCTGGAGGGCCCCTTCATCAGCCGGGAGAAGCGGGGCGCGCACCCCGAGGCCCACCTCCGCTCCTTCG
AGGCCGATGCCTTCCAGGACTTGCTGGCCACCTACGGGCCCCTGGACAATGTCCGCATCGTGACGCTGGC
CCCAGAGTTGGGCCGTAGCCACGAAGTGATCCGGGCGCTGACGGCCCGTGGCATCTGCGTGTCCCTAGGG
CACTCAGTGGCTGACCTGCGGGCGGCAGAGGATGCTGTGTGGAGCGGAGCCACCTTCATCACCCACCTCT
TCAACGCCATGCTGCCTTTCCACCACCGCGACCCAGGCATCGTGGGGCTCCTGACCAGCGACCGGCTGCC
CGCAGGCCGCTGCATCTTCTATGGGATGATTGCAGATGGCACGCACACCAACCCCGCCGCCCTGCGGATC
GCCCACCGTGCCCATCCCCAGGGGCTGGTGCTGGTCACCGATGCCATCCCTGCCTTGGGCCTGGGCAACG
GCCGGCACACGCTGGGACAGCAGGAAGTGGAAGTGGACGGTCTGACGGCCTACGTGGCAGGCACCAAGAC
GCTGAGTGGCAGCATAGCCCCAATGGACGTCTGTGTCCGGCACTTCCTGCAGGCCACAGGCTGCAGCATG
GAGTCGGCCCTGGAGGCTGCATCCCTGCACCCCGCCCAGTTGCTGGGGCTGGAGAAGAGTAAGGGGACCC
TGGACTTTGGTGCTGACGCAGACTTCGTGGTGCTCGACGACTCCCTTCACGTCCAGGCCACCTACATCTC
GGGTGAGCTGGTGTGGCAGGCGGACGCAGCTAGGCAGTGA

Translation (409 aa):
MRGEQGAAGARVLQFTNCRILRGGKLLREDLWVRGGRILDPEKLFFEERRVADERRDCGGRILAPGFIDV
QINGGFGVDFSQATEDVGSGVALVARRILSHGVTSFCPTLVTSPPEVYHKVVPQIPVKSGGPHGAGVLGL
HLEGPFISREKRGAHPEAHLRSFEADAFQDLLATYGPLDNVRIVTLAPELGRSHEVIRALTARGICVSLG
HSVADLRAAEDAVWSGATFITHLFNAMLPFHHRDPGIVGLLTSDRLPAGRCIFYGMIADGTHTNPAALRI
AHRAHPQGLVLVTDAIPALGLGNGRHTLGQQEVEVDGLTAYVAGTKTLSGSIAPMDVCVRHFLQATGCSM
ESALEAASLHPAQLLGLEKSKGTLDFGADADFVVLDDSLHVQATYISGELVWQADAARQ


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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