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Report for CCDS11448.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11448.1 Public Homo sapiens 17 RUNDC1 24 110 108 CCDS HistoryNCBI Gene:146923Re-query CCDS DB by CCDS ID:11448.1Re-query CCDS DB by GeneID:146923See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11448.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361677.6 ENSP00000354622.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361677.6Link to Ensembl Protein Viewer:ENSP00000354622.1Re-query CCDS DB by Nucleotide ID:ENST00000361677Re-query CCDS DB by Protein ID:ENSP00000354622
Original member Current member NCBI NM_173079.5 NP_775102.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173079.5Link to Protein Sequence:NP_775102.3Re-query CCDS DB by Nucleotide ID:NM_173079Re-query CCDS DB by Protein ID:NP_775102Link to BLAST:NP_775102.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775102.3 613 Q96C34-1 613 100% 0 0

Chromosomal Locations for CCDS 11448.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 42980577 42981074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42987256 42987414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42989341 42989539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42990317 42990436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42990851 42991716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1842 nt):
ATGGCGGCTGTCGAAGCGGCTGCAGAGCCGGTAACGGTGGTGGCGGCTGTTGGGCCAAAGGCGAAAGACG
AAGAGGAGGAGGAAGAGGAGCCGCTGCCACCGTGCGAGGCGGTGCGCTGGGCCCCAGTGGGGGCGGTGGC
GGAGGCCCGGCCTGGGGCAACCGCGTTTTTAGAAGAGGCGACGGCCGAGGAGCCTGGCGCGGCCCCGGGC
TCCCCGCCGGATTCGCCGGGCCGGACGCTGCGGCGGCTGCGGGCAGAGCGGCGGCGGCTGGACTCGGCGC
TGCTGGCGCTGTCCTCGCACTTCGCGCAGGTGCAGTTCCGCCTGCGCCAGGTGGTGCGCGGGGCGCCGGC
GGAGCAGCAGCGCCTTCTGCGGGAGCTCGAAGACTTCGCCTTCCGCGGCTGCCCTCACGTCCTAGGTTAC
GAAGGGCCCGGCGACCCCGCCAGCGATGAGGGCGATGGGCTGCCAGGGGACCGGCCATGGTTGCGGGGCG
AGGACCAGAGTGAGCAGGAAAAGCAAGAGCGTCTGGAAACCCAAAGGGAGAAGCAGAAAGAACTGATACT
GCAGCTCAAGACCCAGCTAGATGACCTGGAAACGTTTGCCTATCAAGAGGGCAGTTATGACTCGCTGCCA
CAGTCCGTGGTGTTGGAAAGACAGCGGGTGATCATAGATGAGTTAATAAAGAAACTGGACATGAATCTGA
ATGAGGACATCAGTTCCCTGTCCACTGAAGAGCTTCGTCAGCGTGTAGATGCAGCAGTGGCTCAGATCGT
CAACCCAGCCCGAGTCAAAGAACAGTTGGTTGAGCAACTGAAAACTCAGATCCGAGACCTTGAGATGTTT
ATCAACTTCATCCAAGATGAAGTGGGAAGCCCCTTGCAGACAGGTGGTGGACACTGTGAGTGCAAGGCCG
GTGGGAAGACAGGAAATGGCTGCAGCAGAACAGGCAGCAGCAGAACGCCTCCAGGAAACAGCAAAACAAA
GGCAGAGGATGTGAAGAAAGTCCGGGAGACGGGGCTGCACCTGATGCGGCGAGCGCTGGCCGTGCTCCAG
ATCTTTGCTGTTAGCCAGTTTGGTTGTGCCACAGGCCAGATCCCTCCAACCCTGTGGCAGAGGGTCCAGG
CTGACAGAGACTACTCTCCCTTGCTGAAGAGGCTGGAGGTGTCAGTGGACAGAGTGAAGCAGCTAGCCTT
GAGGCAGCAGCCACATGACCATGTCATCACCTCTGCCAACCTCCAGGACCTCTCTCTGGGAGGCAAGGAT
GAGCTGACTATGGCTGTGCGGAAGGAGCTAACGGTGGCTGTGAGGGACCTGCTGGCCCATGGACTGTATG
CCTCCTCCCCAGGGATGAGCCTTGTTATGGCTCCTATTGCTTGTTTGCTGCCAGCCTTCTCCTCGGCCCC
AGAGGCCATGCACCCGTGGGAGCTCTTTGTAAAGTACTACCATGCTAAGAACGGCCGTGCTTATGTGGAA
TCCCCAGCCCGGAAGCTCTCCCAGTCCTTCGCCCTTCCTGTTACGGGAGGCACTGTTGTCACCCCCAAAC
AGAGCCTACTGACAGCCATCCACATGGTGCTGACAGAGCATGACCCTTTTAAGCGCAGTGCAGACTCAGA
ATTGAAGGCCTTGGTGTGCATGGCACTGAATGAGCAGCGTCTGGTGTCCTGGGTGAACCTCATCTGCAAG
TCCGGGTCACTCATCGAGCCTCACTACCAGCCCTGGAGCTACATGGCACACACAGGCTTTGAGAGTGCCC
TCAACCTGCTCAGTCGCCTCAGCAGCCTCAAGTTTAGCCTCCCTGTAGATCTGGCTGTGCGCCAGCTCAA
AAACATCAAAGATGCCTTTTGA

Translation (613 aa):
MAAVEAAAEPVTVVAAVGPKAKDEEEEEEEPLPPCEAVRWAPVGAVAEARPGATAFLEEATAEEPGAAPG
SPPDSPGRTLRRLRAERRRLDSALLALSSHFAQVQFRLRQVVRGAPAEQQRLLRELEDFAFRGCPHVLGY
EGPGDPASDEGDGLPGDRPWLRGEDQSEQEKQERLETQREKQKELILQLKTQLDDLETFAYQEGSYDSLP
QSVVLERQRVIIDELIKKLDMNLNEDISSLSTEELRQRVDAAVAQIVNPARVKEQLVEQLKTQIRDLEMF
INFIQDEVGSPLQTGGGHCECKAGGKTGNGCSRTGSSRTPPGNSKTKAEDVKKVRETGLHLMRRALAVLQ
IFAVSQFGCATGQIPPTLWQRVQADRDYSPLLKRLEVSVDRVKQLALRQQPHDHVITSANLQDLSLGGKD
ELTMAVRKELTVAVRDLLAHGLYASSPGMSLVMAPIACLLPAFSSAPEAMHPWELFVKYYHAKNGRAYVE
SPARKLSQSFALPVTGGTVVTPKQSLLTAIHMVLTEHDPFKRSADSELKALVCMALNEQRLVSWVNLICK
SGSLIEPHYQPWSYMAHTGFESALNLLSRLSSLKFSLPVDLAVRQLKNIKDAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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