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Report for CCDS5924.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5924.1 Public Homo sapiens 7 SMARCD3 24 110 108 CCDS HistoryNCBI Gene:6604Re-query CCDS DB by CCDS ID:5924.1Re-query CCDS DB by GeneID:6604See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5924.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356800.6 ENSP00000349254.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356800.6Link to Ensembl Protein Viewer:ENSP00000349254.2Re-query CCDS DB by Nucleotide ID:ENST00000356800Re-query CCDS DB by Protein ID:ENSP00000349254
Original member Current member EBI ENST00000392811.6 ENSP00000376558.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392811.6Link to Ensembl Protein Viewer:ENSP00000376558.2Re-query CCDS DB by Nucleotide ID:ENST00000392811Re-query CCDS DB by Protein ID:ENSP00000376558
Original member Current member NCBI NM_001003802.2 NP_001003802.1 Accepted alive Link to Nucleotide Sequence:NM_001003802.2Link to Protein Sequence:NP_001003802.1Re-query CCDS DB by Nucleotide ID:NM_001003802Re-query CCDS DB by Protein ID:NP_001003802Link to BLAST:NP_001003802.1
Original member Current member NCBI NM_003078.4 NP_003069.2 Accepted alive Link to Nucleotide Sequence:NM_003078.4Link to Protein Sequence:NP_003069.2Re-query CCDS DB by Nucleotide ID:NM_003078Re-query CCDS DB by Protein ID:NP_003069Link to BLAST:NP_003069.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001003802.1 470 Q6STE5-2 470 100% 0 0
NP_003069.2 470 Q6STE5-2 470 100% 0 0

Chromosomal Locations for CCDS 5924.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 151239103 151239156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151239396 151239497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151239624 151239746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151240112 151240247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151240425 151240522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151241492 151241653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151241877 151241978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151242137 151242232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151242481 151242603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151242721 151242843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151243659 151243701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151245460 151245671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151275114 151275152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1413 nt):
ATGACTCCAGGTCTTCAGCACCCACCCACCGTGGTACAGCGCCCCGGGATGCCGTCTGGAGCCCGGATGC
CCCACCAGGGGGCGCCCATGGGCCCCCCGGGCTCCCCGTACATGGGCAGCCCCGCCGTGCGACCCGGCCT
GGCCCCCGCGGGCATGGAGCCCGCCCGCAAGCGAGCAGCGCCCCCGCCCGGGCAGAGCCAGGCACAGAGC
CAGGGCCAGCCGGTGCCCACCGCCCCCGCGCGGAGCCGCAGTGCCAAGAGGAGGAAGATGGCTGACAAAA
TCCTCCCTCAAAGGATTCGGGAGCTGGTCCCCGAGTCCCAGGCTTACATGGACCTCTTGGCATTTGAGAG
GAAACTGGATCAAACCATCATGCGGAAGCGGGTGGACATCCAGGAGGCTCTGAAGAGGCCCATGAAGCAA
AAGCGGAAGCTGCGACTCTATATCTCCAACACTTTTAACCCTGCGAAGCCTGATGCTGAGGATTCCGACG
GCAGCATTGCCTCCTGGGAGCTACGGGTGGAGGGGAAGCTCCTGGATGATCCCAGCAAACAGAAGCGGAA
GTTCTCTTCTTTCTTCAAGAGTTTGGTCATCGAGCTGGACAAAGATCTTTATGGCCCTGACAACCACCTC
GTTGAGTGGCATCGGACACCCACGACCCAGGAGACGGACGGCTTCCAGGTGAAACGGCCTGGGGACCTGA
GTGTGCGCTGCACGCTGCTCCTCATGCTGGACTACCAGCCTCCCCAGTTCAAACTGGATCCCCGCCTAGC
CCGGCTGCTGGGGCTGCACACACAGAGCCGCTCAGCCATTGTCCAGGCCCTGTGGCAGTATGTGAAGACC
AACAGGCTGCAGGACTCCCATGACAAGGAATACATCAATGGGGACAAGTATTTCCAGCAGATTTTTGATT
GTCCCCGGCTGAAGTTTTCTGAGATTCCCCAGCGCCTCACAGCCCTGCTATTGCCCCCTGACCCAATTGT
CATCAACCATGTCATCAGCGTGGACCCTTCAGACCAGAAGAAGACGGCGTGCTATGACATTGACGTGGAG
GTGGAGGAGCCATTAAAGGGGCAGATGAGCAGCTTCCTCCTATCCACGGCCAACCAGCAGGAGATCAGTG
CTCTGGACAGTAAGATCCATGAGACGATTGAGTCCATAAACCAGCTCAAGATCCAGAGGGACTTCATGCT
AAGCTTCTCCAGAGACCCCAAAGGCTATGTCCAAGACCTGCTCCGCTCCCAGAGCCGGGACCTCAAGGTG
ATGACAGATGTAGCCGGCAACCCTGAAGAGGAGCGCCGGGCTGAGTTCTACCACCAGCCCTGGTCCCAGG
AGGCCGTCAGTCGCTACTTCTACTGCAAGATCCAGCAGCGCAGGCAGGAGCTGGAGCAGTCGCTGGTTGT
GCGCAACACCTAG

Translation (470 aa):
MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQS
QGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQ
KRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKDLYGPDNHL
VEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKT
NRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVE
VEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKV
MTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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