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Report for CCDS10161.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10161.1 Public Homo sapiens 15 CGNL1 24 110 108 CCDS HistoryNCBI Gene:84952Re-query CCDS DB by CCDS ID:10161.1Re-query CCDS DB by GeneID:84952See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10161.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000281282.6 ENSP00000281282.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000281282.6Link to Ensembl Protein Viewer:ENSP00000281282.5Re-query CCDS DB by Nucleotide ID:ENST00000281282Re-query CCDS DB by Protein ID:ENSP00000281282
Original member Current member NCBI NM_001252335.2 NP_001239264.1 Accepted alive Link to Nucleotide Sequence:NM_001252335.2Link to Protein Sequence:NP_001239264.1Re-query CCDS DB by Nucleotide ID:NM_001252335Re-query CCDS DB by Protein ID:NP_001239264Link to BLAST:NP_001239264.1
Original member Current member NCBI NM_032866.5 NP_116255.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032866.5Link to Protein Sequence:NP_116255.2Re-query CCDS DB by Nucleotide ID:NM_032866Re-query CCDS DB by Protein ID:NP_116255Link to BLAST:NP_116255.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239264.1 1302 Q0VF96-1 1302 100% 0 0
NP_116255.2 1302 Q0VF96-1 1302 100% 0 0

Chromosomal Locations for CCDS 10161.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 57438000 57439601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57440377 57440471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57442373 57442478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57451500 57451601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57452141 57452289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57453683 57453818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57461680 57461892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57516780 57516986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57518393 57518497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57523489 57523641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57524581 57524751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57528654 57528815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57531690 57531779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57543696 57543779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57544473 57544597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57545592 57545700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57546076 57546239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57547355 57547490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3909 nt):
ATGGAGCTGTATTTCGGTGAATATCAACATGTGCAGCAGGAATATGGGGTCCATCTGAGACTCGCAAGTG
ATGATACCCAAAAATCAAGGAGTTCCCAGAACTCCAAGGCAGGCTCCTACGGTGTCAGTATTCGGGTCCA
GGGAATTGATGGTCACCCCTATATTGTCCTGAATAACACAGAACGGTGCCTAGCAGGCACATCGTTTTCT
GAAAATGGGCCACCCTTTCCACCTCCAGTGATAAATAACCTGCCTCTACATTCCAGCAATGGTTCTGTGC
CAAAGGAGAACAGTGAAGAACTTCAGCTTCCAGAAAACCCATACGCCCAGCCTAGCCCAATAAGAAACCT
GAAACAGCCCCTGCTCCATGAGGGCAAGAATGGAGTTCTAGATCGCAAAGACGGGTCTGTGAAGCCATCT
CACCTGCTGAACTTTCAGAGGCATCCAGAGCTTTTGCAACCCTATGACCCTGAAAAGAATGAGTTGAATT
TACAAAATCACCAGCCTTCTGAGAGTAATTGGCTAAAAACGTTGACAGAAGAAGGCATCAACAATAAGAA
GCCTTGGACTTGCTTTCCCAAACCTAGCAATTCCCAGCCTACCAGTCCCTCCTTGGAAGACCCGGCCAAA
TCTGGTGTGACAGCTATTCGTTTATGCAGCTCCGTGGTCATAGAGGACCCCAAAAAGCAGACCTCAGTGT
GTGTAAACGTTCAGAGCTGCACCAAGGAGAGGGTGGGAGAGGAGGCCCTTTTCACTAGCGGGAGGCCCCT
GACTGCCCACAGCCCACATGCCCACCCTGAAACCAAGAAAACCAGGCCAGATGTTCTTCCCTTCCGGCGA
CAGGATTCAGCGGGACCCGTCCTGGATGGAGCTCGGTCCCGGAGGTCCTCCTCGTCATCCACAACTCCCA
CGTCAGCCAACTCTTTGTACAGGTTTTTACTGGATGATCAGGAATGTGCCATCCATGCCGACAACGTCAA
TCGTCATGAAAACAGAAGGTATATTCCCTTCCTGCCAGGAACTGGACGGGATATTGATACAGGATCAATT
CCTGGTGTGGATCAGTTAATTGAAAAATTTGATCAAAAACCTGGGCTTCAGAGAAGAGGAAGGTCTGGGA
AGCGAAACAGAATTAATACAGATGACAGGAAAAGATCCAGAAGCGTGGATAGCGCCTTTCCTTTTGGCCT
CCAAGGGAACTCGGAGTACCTGATTGAATTCAGTAGGAACTTGGGCAAGTCAAGCGAACACCTCCTCCGG
CCTTCCCAGGTGTGCCCGCAGCGGCCACTGTCTCAGGAGCGCCGTGGGAAACAGAGCGTGGGCCGCACCT
TTGCAAAGCTGCAGGGAGCAGCGCACGGGGCTTCATGTGCCCACTCCAGGCCTCCCCAGCCGAACATAGA
TGGGAAAGTTCTGGAAACCGAAGGTAGTCAGGAAAGTACAGTGATCCGTGCGCCCTCCCTTGGTGCACAG
AGTAAAAAGGAGGAGGAGGTGAAAACAGCCACCGCTACGCTGATGTTACAGAACCGGGCAACAGCAACTT
CGCCTGATTCTGGTGCCAAGAAAATTTCCGTGAAGACATTTCCTTCGGCCTCAAATACTCAGGCCACACC
GGATCTCTTAAAGGGCCAGCAAGAGCTCACTCAGCAAACCAATGAGGAGACAGCTAAGCAGATTCTCTAC
AATTACCTCAAAGAAGGAAGCACTGATAATGACGATGCTACTAAAAGGAAAGTCAACTTGGTCTTTGAGA
AAATCCAGACCTTAAAGTCTCGAGCAGCTGGGAGCGCCCAAGGAAATAACCAAGCTTGTAATTCCACATC
TGAAGTCAAAGATCTATTGGAACAGAAAAGCAAGTTGACCATAGAAGTGGCTGAACTTCAGAGACAGCTT
CAACTGGAAGTCAAGAATCAACAGAACATTAAAGAAGAGAGAGAGAGGATGAGAGCAAACCTAGAAGAGC
TCCGAAGCCAACACAACGAAAAGGTGGAGGAGAACTCCACATTGCAGCAACGACTGGAAGAAAGTGAAGG
GGAGCTCCGGAAGAATCTGGAGGAGCTATTCCAGGTGAAGATGGAACGGGAGCAGCATCAGACTGAGATC
AGGGATCTCCAGGACCAGCTCTCAGAAATGCACGATGAACTGGACAGTGCAAAGCGATCGGAGGACAGGG
AGAAGGGAGCTCTGATTGAGGAGCTCTTACAGGCAAAACAGGATCTTCAAGATCTGCTGATTGCCAAAGA
GGAGCAAGAAGACCTCTTGAGAAAGCGAGAGCGTGAACTCACCGCCCTGAAGGGAGCCCTGAAAGAAGAG
GTTTCCAGCCATGATCAGGAGATGGACAAGCTGAAGGAGCAATATGATGCTGAGTTGCAGGCCCTGAGGG
AGAGTGTGGAAGAAGCAACCAAGAATGTCGAGGTCTTGGCGAGCAGGAGCAACACTTCAGAGCAAGACCA
GGCGGGGACTGAAATGCGCGTGAAGCTTCTGCAGGAGGAGAATGAGAAGCTGCAGGGAAGAAGCGAAGAG
CTGGAGCGGAGAGTTGCTCAGCTTCAAAGGCAGATCGAGGACCTGAAAGGCGATGAAGCCAAGGCGAAGG
AAACGCTGAAGAAGTACGAGGGAGAAATACGACAGTTAGAGGAGGCCCTTGTGCACGCCAGAAAGGAAGA
AAAAGAAGCTGTGTCAGCCAGAAGGGCCCTGGAGAATGAACTGGAGGCTGCTCAGGGAAATCTGAGTCAG
ACTACCCAGGAGCAGAAGCAGTTGTCTGAGAAGCTCAAAGAGGAGAGTGAGCAGAAGGAGCAGCTAAGAA
GGTTGAAGAACGAGATGGAGAATGAGCGGTGGCACCTGGGCAAAACCATTGAGAAACTGCAGAAGGAGAT
GGCAGACATTGTTGAGGCCTCCCGTACCTCAACCCTGGAGCTCCAGAACCAGCTGGATGAGTATAAGGAG
AAAAACCGCAGGGAGCTCGCAGAAATGCAAAGACAGTTGAAGGAGAAAACGCTGGAGGCAGAAAAGTCCC
GACTGACAGCCATGAAAATGCAGGATGAGATGCGTCTGATGGAGGAAGAGTTACGGGACTACCAGAGAGC
TCAGGATGAAGCACTCACAAAAAGGCAGCTTCTGGAGCAGACGCTGAAGGACCTGGAGTATGAGCTGGAA
GCCAAGAGTCACCTCAAAGATGACCGCAGCAGGCTGGTCAAGCAGATGGAGGACAAGGTGTCTCAACTGG
AGATGGAACTGGAAGAAGAGAGAAACAACTCAGATTTGCTGTCTGAGAGGATCAGTAGGAGCAGGGAACA
GATGGAGCAGTTGAGGAATGAGCTACTTCAGGAGAGAGCTGCGAGACAAGACTTGGAGTGCGACAAGATT
TCCCTGGAGAGGCAGAACAAGGACTTAAAGAGCCGGATTATCCACCTGGAAGGTTCCTACAGGTCCAGCA
AAGAGGGGCTGGTTGTGCAGATGGAGGCCAGGATCGCGGAGCTGGAGGACCGCCTGGAGAGTGAGGAGAG
GGATCGGGCCAATCTTCAGCTCAGCAACCGGCGGCTGGAGCGGAAAGTGAAGGAGCTGGTGATGCAGGTG
GATGATGAGCACCTGTCATTGACTGATCAGAAGGACCAGCTGAGCTTGCGTTTGAAAGCCATGAAGCGGC
AGGTGGAGGAGGCTGAGGAGGAAATCGACAGACTGGAAAGTTCTAAAAAGAAGCTGCAGAGGGAGCTGGA
GGAGCAGATGGACATGAATGAGCATCTGCAGGGGCAGCTCAACTCCATGAAGAAGGACTTAAGACTGAAG
AAGCTGCCGAGTAAAGTGCTGGATGACATGGATGACGACGATGACCTCAGCACGGATGGGGGAAGCCTCT
ATGAGGCGCCTGTGAGCTACACATTCTCCAAGGACAGCACCGTCGCCAGCCAGATCTGA

Translation (1302 aa):
MELYFGEYQHVQQEYGVHLRLASDDTQKSRSSQNSKAGSYGVSIRVQGIDGHPYIVLNNTERCLAGTSFS
ENGPPFPPPVINNLPLHSSNGSVPKENSEELQLPENPYAQPSPIRNLKQPLLHEGKNGVLDRKDGSVKPS
HLLNFQRHPELLQPYDPEKNELNLQNHQPSESNWLKTLTEEGINNKKPWTCFPKPSNSQPTSPSLEDPAK
SGVTAIRLCSSVVIEDPKKQTSVCVNVQSCTKERVGEEALFTSGRPLTAHSPHAHPETKKTRPDVLPFRR
QDSAGPVLDGARSRRSSSSSTTPTSANSLYRFLLDDQECAIHADNVNRHENRRYIPFLPGTGRDIDTGSI
PGVDQLIEKFDQKPGLQRRGRSGKRNRINTDDRKRSRSVDSAFPFGLQGNSEYLIEFSRNLGKSSEHLLR
PSQVCPQRPLSQERRGKQSVGRTFAKLQGAAHGASCAHSRPPQPNIDGKVLETEGSQESTVIRAPSLGAQ
SKKEEEVKTATATLMLQNRATATSPDSGAKKISVKTFPSASNTQATPDLLKGQQELTQQTNEETAKQILY
NYLKEGSTDNDDATKRKVNLVFEKIQTLKSRAAGSAQGNNQACNSTSEVKDLLEQKSKLTIEVAELQRQL
QLEVKNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLEESEGELRKNLEELFQVKMEREQHQTEI
RDLQDQLSEMHDELDSAKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEE
VSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEE
LERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAAQGNLSQ
TTQEQKQLSEKLKEESEQKEQLRRLKNEMENERWHLGKTIEKLQKEMADIVEASRTSTLELQNQLDEYKE
KNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEALTKRQLLEQTLKDLEYELE
AKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERISRSREQMEQLRNELLQERAARQDLECDKI
SLERQNKDLKSRIIHLEGSYRSSKEGLVVQMEARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQV
DDEHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKKDLRLK
KLPSKVLDDMDDDDDLSTDGGSLYEAPVSYTFSKDSTVASQI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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