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Report for CCDS41622.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41622.1 Public Homo sapiens 11 INSC 24 110 108 CCDS HistoryNCBI Gene:387755Re-query CCDS DB by CCDS ID:41622.1Re-query CCDS DB by GeneID:387755See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41622.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379556.8 ENSP00000368874.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379556.8Link to Ensembl Protein Viewer:ENSP00000368874.3Re-query CCDS DB by Nucleotide ID:ENST00000379556Re-query CCDS DB by Protein ID:ENSP00000368874
Original member Current member EBI ENST00000530161.5 ENSP00000436194.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000530161.5Link to Ensembl Protein Viewer:ENSP00000436194.1Re-query CCDS DB by Nucleotide ID:ENST00000530161Re-query CCDS DB by Protein ID:ENSP00000436194
Original member Current member NCBI NM_001042536.3 NP_001036001.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001042536.3Link to Protein Sequence:NP_001036001.1Re-query CCDS DB by Nucleotide ID:NM_001042536Re-query CCDS DB by Protein ID:NP_001036001Link to BLAST:NP_001036001.1
Original member Current member NCBI NM_001278313.2 NP_001265242.1 Accepted alive Link to Nucleotide Sequence:NM_001278313.2Link to Protein Sequence:NP_001265242.1Re-query CCDS DB by Nucleotide ID:NM_001278313Re-query CCDS DB by Protein ID:NP_001265242Link to BLAST:NP_001265242.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036001.1 532 Q1MX18-2 532 100% 0 0
NP_001265242.1 532 Q1MX18-2 532 100% 0 0

Chromosomal Locations for CCDS 41622.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 15149175 15149230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 15175741 15176086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 15177111 15177163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 15178324 15178447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 15190701 15190814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 15200824 15200949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 15221477 15221648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 15225650 15225828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 15235602 15235668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 15238919 15239074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 15240447 15240523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 15245912 15246040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1599 nt):
ATGATGGCACTGCCTGGAGGTCGCCACCTGGACTCCGTCACCCTGCCGGGTCAGCGGCTACACCTGATGC
AGGTGGACTCAGTCCAGCGCTGGATGGAAGATCTGAAGCTCATGACCGAGTGCGAGTGCATGTGTGTCCT
GCAGGCCAAGCCCATCAGCCTGGAAGAGGATGCACAGGGTGACCTCATCCTGGCAGGTGGCCCTGGCCCT
GGAGACCCCCTGCAGCTGCTGCTCAAACGGGGTTGGGTCATTAGCACAGAGCTGCGCAGGATCGGGCAGA
AGCTGGCCCAGGACCGCTGGGCACGGGTGCACAGCATGAGCGTGCGTCTGACCTGCCATGCCCGCTCCAT
GGTCAGCGAGTACAGTGCTGTCAGCAGGAACTCCTTGAAGGAAATGGGCGAGATTGAGAAGCTGCTAATG
GAGAAATGCTCGGAGCTCTCGGCAGTCACAGAGAGGTGCCTTCAGGTTGAGAATGAGCATGTCCTGAAGT
CAATGAAGGCCTGCGTGAGTGAGACCCTGAGCATGCTGGGCCAGCACTTTGGTCAGCTGCTGGAGCTGGC
CCTGACACGGGAGGTTCAGGCACTGGTGAGAAAAATTGATGCCTCAGACAATATCTACACCACAGAGTCC
ACCACAGGGAACCTGTTCAGCCTGACCCAGGAGGGGGCTCCCTTGTGCCGCATCATAGCCAAGGAGGGTG
GGGTCGTAGCACTCTTCAAGGTTTGCCGGCAGGACAGTTTCCGGTGCTTGTACCCCCAGGCGCTCCGCAC
GCTGGCCTCCATCTGCTGCGTGGAAGAGGGTGTCCACCAGCTGGAGAAGGTGGATGGCGTTCTGTGCTTG
GCCGACATCCTGACCGACAACAGCCACTCAGAGGCCACACGGGCTGAGGCTGCGGCTGTGGTGGCCCAGG
TCACCTCCCCACACCTGCCCGTCACCCAGCACCTCAGTAGCTTCCTGGAGAGCATGGAGGAGATCGTGAC
AGCCCTCGTCAAACTGTGCCAAGAGGCCTCATCAGGGGAAGTCTTCCTACTGGCCTCTGCGGCCCTTGCC
AACATCACGTTCTTTGACACAATGGCCTGCGAGATGCTCCTGCAGTTGAATGCCATCCGTGTTCTCCTGG
AAGCCTGCAGTGACAAGCAGAGAGTGGACACGCCTTACACTCGGGACCAGATTGTGACCATCTTGGCAAA
CATGTCTGTCCTAGAACAGTGTGCCTCTGACATCATTCAGGAAAATGGGGTCCAGCTTATCATGGGCATG
CTGTCTGAAAAACCAAGGTCTGGGACTCCTGCTGAAGTGGCAGCCTGTGAGCGAGTCCAGCAGAAAGCTG
CAGTGACCCTGGCTCGTCTCAGCCGAGACCCAGATGTGGCACGGGAGGCCGTGCGGCTCAGCTGCATGTC
CCGTCTCATCGAGCTCTGCAGATCCCCATCAGAGAGGAACAGCAGTGACGCCGTGCTTGTGGCCTGCCTG
GCTGCTCTGCGTAGATTGGCTGGGGTCTGCCCTGAAGGCCTCCAGGACTCTGACTTTCAGCAGTTGGTCC
AGCCTCGGCTGGTGGACTCCTTCTTACTCTGCAGCAACATGGAGGAGAGTTTTGTGTAG

Translation (532 aa):
MMALPGGRHLDSVTLPGQRLHLMQVDSVQRWMEDLKLMTECECMCVLQAKPISLEEDAQGDLILAGGPGP
GDPLQLLLKRGWVISTELRRIGQKLAQDRWARVHSMSVRLTCHARSMVSEYSAVSRNSLKEMGEIEKLLM
EKCSELSAVTERCLQVENEHVLKSMKACVSETLSMLGQHFGQLLELALTREVQALVRKIDASDNIYTTES
TTGNLFSLTQEGAPLCRIIAKEGGVVALFKVCRQDSFRCLYPQALRTLASICCVEEGVHQLEKVDGVLCL
ADILTDNSHSEATRAEAAAVVAQVTSPHLPVTQHLSSFLESMEEIVTALVKLCQEASSGEVFLLASAALA
NITFFDTMACEMLLQLNAIRVLLEACSDKQRVDTPYTRDQIVTILANMSVLEQCASDIIQENGVQLIMGM
LSEKPRSGTPAEVAACERVQQKAAVTLARLSRDPDVAREAVRLSCMSRLIELCRSPSERNSSDAVLVACL
AALRRLAGVCPEGLQDSDFQQLVQPRLVDSFLLCSNMEESFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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