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Report for CCDS73408.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73408.1 Public Homo sapiens 11 MSANTD2 24 110 108 CCDS HistoryNCBI Gene:79684Re-query CCDS DB by CCDS ID:73408.1Re-query CCDS DB by GeneID:79684See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 73408.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000526629.1 ENSP00000435705.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000526629.1Link to Ensembl Protein Viewer:ENSP00000435705.1Re-query CCDS DB by Nucleotide ID:ENST00000526629Re-query CCDS DB by Protein ID:ENSP00000435705
Original member Current member NCBI NM_001312920.2 NP_001299849.1 Accepted alive Link to Nucleotide Sequence:NM_001312920.2Link to Protein Sequence:NP_001299849.1Re-query CCDS DB by Nucleotide ID:NM_001312920Re-query CCDS DB by Protein ID:NP_001299849Link to BLAST:NP_001299849.1
Original member Current member NCBI NM_001312921.2 NP_001299850.1 Accepted alive Link to Nucleotide Sequence:NM_001312921.2Link to Protein Sequence:NP_001299850.1Re-query CCDS DB by Nucleotide ID:NM_001312921Re-query CCDS DB by Protein ID:NP_001299850Link to BLAST:NP_001299850.1
Original member Current member NCBI NM_001352400.2 NP_001339329.1 Accepted alive Link to Nucleotide Sequence:NM_001352400.2Link to Protein Sequence:NP_001339329.1Re-query CCDS DB by Nucleotide ID:NM_001352400Re-query CCDS DB by Protein ID:NP_001339329Link to BLAST:NP_001339329.1
Original member Current member NCBI NM_001352401.2 NP_001339330.1 Accepted alive Link to Nucleotide Sequence:NM_001352401.2Link to Protein Sequence:NP_001339330.1Re-query CCDS DB by Nucleotide ID:NM_001352401Re-query CCDS DB by Protein ID:NP_001339330Link to BLAST:NP_001339330.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001299849.1 329 Q6P1R3-2 329 100% 0 0
NP_001299850.1 329 Q6P1R3-2 329 100% 0 0
NP_001339329.1 329 Q6P1R3-2 329 100% 0 0
NP_001339330.1 329 Q6P1R3-2 329 100% 0 0

Chromosomal Locations for CCDS 73408.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 124767176 124768028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124772994 124773054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124774719 124774794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGGAGGACTATTCACAGGAGGACTGGGGAAACCACAGTCAGGATCTCCATGGCTATCCAACAGATCAGG
AATTGGATGAAATACCTGTCACAAAGAGAACATTAAAAATAAAACAAGAGTCTTCTGAAGAAGCACAGAA
GAGAGACATCATGCAGAATATTGTACAGATTTTGGAATCGGTACAGTTGAAATGGGAACTTTTTCAGAGC
TGGACAGACTTTTCAAGGCTCCATCTTTCTAATAAACTGGCCATTTTTGGAATTGGTTATAACACCCGTT
GGAAAGAGGATATCCGTTACCATTATGCTGAGATCAGCTCCCAGGTGCCCCTTGGCAAGCGACTTCGGGA
GTACTTCAACTCTGAGAAGCCTGAAGGACGGATCATTATGACCCGAGTGCAGAAAATGAACTGGAAAAAT
GTTTACTACAAATTTTTAGAGATCACTATTAGCGAAGCTAGGTGCTTGGAGCTGCACATGGAAATTGACT
GGATACCCATTGCCCACTCCAAACCAACTGGTGGGAATGTTGTTCAATATTTATTGCCTGGGGGTATTCC
TAAAAGCCCAGGCCTTTATGCCATTGGCTATGAAGAATGTATTGAGAGGCCCCTCTCACCACACATGGAG
CAAAGTTCCCTGGACCCAGGAAAAGAGGGCCGGGTTGACCTGGAAACCCTTTCAGCACAAGCCTCATTAC
AGGTGGAAATAGAACCCACCCGAATTATCTATTGCTACCTCGGGATTGCTGAGGTCAGGACTCTACAGCA
GTGCTTATTTTTACATTTCCAAGCGAATACCAAAACCTTCAGCAAAGATTGGGTTGGTATTAACGGGTTT
TTGTCTCAGAACTGTATTGTGGATCCCGGAGTTTCCCCCAAATCCATCTACATCAAATTTGTAGAAGTAG
AGAGGGATTTTCTTTCCGCAGGCTCTTTAGTTGAGTGCCTGGAAAAAGCCATTGGATACCCCTTAAAATT
TAACAACTGA

Translation (329 aa):
MEDYSQEDWGNHSQDLHGYPTDQELDEIPVTKRTLKIKQESSEEAQKRDIMQNIVQILESVQLKWELFQS
WTDFSRLHLSNKLAIFGIGYNTRWKEDIRYHYAEISSQVPLGKRLREYFNSEKPEGRIIMTRVQKMNWKN
VYYKFLEITISEARCLELHMEIDWIPIAHSKPTGGNVVQYLLPGGIPKSPGLYAIGYEECIERPLSPHME
QSSLDPGKEGRVDLETLSAQASLQVEIEPTRIIYCYLGIAEVRTLQQCLFLHFQANTKTFSKDWVGINGF
LSQNCIVDPGVSPKSIYIKFVEVERDFLSAGSLVECLEKAIGYPLKFNN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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