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Report for CCDS1552.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1552.1 Public Homo sapiens 1 MIXL1 24 110 108 CCDS HistoryNCBI Gene:83881Re-query CCDS DB by CCDS ID:1552.1Re-query CCDS DB by GeneID:83881See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1552.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366810.6 ENSP00000355775.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000366810.6Link to Ensembl Protein Viewer:ENSP00000355775.4Re-query CCDS DB by Nucleotide ID:ENST00000366810Re-query CCDS DB by Protein ID:ENSP00000355775
Original member Current member NCBI NM_031944.3 NP_114150.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031944.3Link to Protein Sequence:NP_114150.1Re-query CCDS DB by Nucleotide ID:NM_031944Re-query CCDS DB by Protein ID:NP_114150Link to BLAST:NP_114150.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_114150.1 232 Q9H2W2-1 232 100% 0 0

Chromosomal Locations for CCDS 1552.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 226223682 226224074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226225507 226225812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (699 nt):
ATGGCCACAGCCGAGTCCCGTGCGCTCCAGTTTGCCGAGGGCGCCGCGTTTCCAGCGTACCGGGCCCCCC
ACGCCGGCGGGGCGCTCCTGCCGCCCCCGAGCCCTGCGGCAGCCCTGCTCCCTGCGCCGCCCGCGGGCCC
CGGCCCAGCGACCTTTGCGGGCTTCCTCGGCCGGGACCCCGGGCCGGCCCCGCCGCCCCCCGCCAGCCTG
GGCTCGCCTGCGCCCCCCAAAGGCGCGGCCGCCCCGTCGGCGTCGCAGCGCCGCAAGCGCACGTCTTTCA
GCGCCGAACAGCTGCAGCTGCTGGAGCTCGTCTTCCGCCGGACCCGGTACCCCGACATCCACTTGCGCGA
GCGCCTGGCCGCGCTCACCCTGCTCCCCGAGTCCAGGATCCAGGTATGGTTCCAGAACAGGCGTGCCAAG
TCTCGGCGTCAGAGTGGGAAATCCTTCCAACCTTTGGCTAGGCCGGAGATTATCCTCAACCACTGTGCTC
CTGGAACTGAAACGAAATGTCTGAAGCCCCAGCTGCCTCTTGAGGTAGATGTGAACTGCCTGCCCGAACC
AAACGGGGTTGGAGGGGGCATCTCTGACTCTAGCTCCCAAGGTCAGAATTTTGAAACCTGTTCCCCTCTC
TCTGAAGACATTGGTTCAAAGCTGGACTCATGGGAGGAACACATCTTTTCTGCCTTTGGTAACTTTTGA

Translation (232 aa):
MATAESRALQFAEGAAFPAYRAPHAGGALLPPPSPAAALLPAPPAGPGPATFAGFLGRDPGPAPPPPASL
GSPAPPKGAAAPSASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLAALTLLPESRIQVWFQNRRAK
SRRQSGKSFQPLARPEIILNHCAPGTETKCLKPQLPLEVDVNCLPEPNGVGGGISDSSSQGQNFETCSPL
SEDIGSKLDSWEEHIFSAFGNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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