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Report for CCDS56606.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56606.1 Public Homo sapiens X NXT2 24 110 108 CCDS HistoryNCBI Gene:55916Re-query CCDS DB by CCDS ID:56606.1Re-query CCDS DB by GeneID:55916See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56606.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372103.1 ENSP00000361175.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372103.1Link to Ensembl Protein Viewer:ENSP00000361175.1Re-query CCDS DB by Nucleotide ID:ENST00000372103Re-query CCDS DB by Protein ID:ENSP00000361175
Original member Current member EBI ENST00000372107.5 ENSP00000361179.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372107.5Link to Ensembl Protein Viewer:ENSP00000361179.1Re-query CCDS DB by Nucleotide ID:ENST00000372107Re-query CCDS DB by Protein ID:ENSP00000361179
Original member Current member NCBI NM_001242618.2 NP_001229547.1 Accepted alive Link to Nucleotide Sequence:NM_001242618.2Link to Protein Sequence:NP_001229547.1Re-query CCDS DB by Nucleotide ID:NM_001242618Re-query CCDS DB by Protein ID:NP_001229547Link to BLAST:NP_001229547.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229547.1 114 Q9NPJ8-4 114 100% 0 0

Chromosomal Locations for CCDS 56606.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 109538114 109538131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 109541475 109541619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 109542507 109542688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (345 nt):
ATGGATAAAAGAAGACGGGCACTAACCAGGCTGTATCTGGACAAGGCCACCTTAATATGGAATGGAAATG
CTGTTTCAGGGCTGGATGCCCTAAATAATTTTTTTGACACATTGCCTTCTAGTGAGTTCCAGGTCAATAT
GTTAGATTGCCAACCAGTTCATGAGCAAGCAACTCAGTCCCAAACTACAGTTCTTGTTGTGACCAGTGGA
ACTGTGAAGTTTGATGGAAACAAACAACATTTCTTCAACCAGAACTTCCTGCTGACTGCTCAGTCCACTC
CCAACAATACTGTGTGGAAGATTGCAAGTGATTGCTTCCGTTTTCAAGATTGGTCTAGTAGTTAA

Translation (114 aa):
MDKRRRALTRLYLDKATLIWNGNAVSGLDALNNFFDTLPSSEFQVNMLDCQPVHEQATQSQTTVLVVTSG
TVKFDGNKQHFFNQNFLLTAQSTPNNTVWKIASDCFRFQDWSSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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