NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS34552.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34552.1 Public Homo sapiens 6 PLEKHG1 24 110 108 CCDS HistoryNCBI Gene:57480Re-query CCDS DB by CCDS ID:34552.1Re-query CCDS DB by GeneID:57480See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34552.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358517.6 ENSP00000351318.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000358517.6Link to Ensembl Protein Viewer:ENSP00000351318.2Re-query CCDS DB by Nucleotide ID:ENST00000358517Re-query CCDS DB by Protein ID:ENSP00000351318
Original member Current member EBI ENST00000644968.1 ENSP00000496254.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000644968.1Link to Ensembl Protein Viewer:ENSP00000496254.1Re-query CCDS DB by Nucleotide ID:ENST00000644968Re-query CCDS DB by Protein ID:ENSP00000496254
Original member Current member EBI ENST00000696526.1 ENSP00000512689.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000696526.1Link to Ensembl Protein Viewer:ENSP00000512689.1Re-query CCDS DB by Nucleotide ID:ENST00000696526Re-query CCDS DB by Protein ID:ENSP00000512689
Original member Current member NCBI NM_001029884.3 NP_001025055.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001029884.3Link to Protein Sequence:NP_001025055.1Re-query CCDS DB by Nucleotide ID:NM_001029884Re-query CCDS DB by Protein ID:NP_001025055Link to BLAST:NP_001025055.1
Original member Current member NCBI NM_001329800.2 NP_001316729.1 Accepted alive Link to Nucleotide Sequence:NM_001329800.2Link to Protein Sequence:NP_001316729.1Re-query CCDS DB by Nucleotide ID:NM_001329800Re-query CCDS DB by Protein ID:NP_001316729Link to BLAST:NP_001316729.1
Original member Current member NCBI NM_001329801.2 NP_001316730.1 Accepted alive Link to Nucleotide Sequence:NM_001329801.2Link to Protein Sequence:NP_001316730.1Re-query CCDS DB by Nucleotide ID:NM_001329801Re-query CCDS DB by Protein ID:NP_001316730Link to BLAST:NP_001316730.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001025055.1 1385 Q9ULL1 1385 100% 0 0
NP_001316729.1 1385 Q9ULL1 1385 100% 0 0
NP_001316730.1 1385 Q9ULL1 1385 100% 0 0

Chromosomal Locations for CCDS 34552.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 150733682 150734092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 150768638 150768738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 150786390 150786459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 150795856 150795902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 150800719 150800869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 150804610 150804741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 150809105 150809287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 150809381 150809476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 150809648 150809734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 150818183 150818216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 150819679 150819774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 150821195 150821233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 150823654 150823676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 150830582 150832205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 150839833 150840896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4158 nt):
ATGGAGCTCTCTGATAGTGACCGACCCGTCAGCTTCGGTTCCACATCATCCTCGGCCTCTTCCCGCGACA
GCCATGGTTCCTTCGGCAGCAGAATGACCTTAGTTTCAAATAGCCACATGGGCTTGTTTAACCAGGATAA
GGAGGTAGGGGCCATAAAACTGGAGCTGATTCCTGCCAGGCCGTTTTCCAGCAGCGAGCTGCAGAGGGAC
AACCCCGCCACGGGGCAACAGAACGCGGATGAGGGCAGCGAAAGGCCACCCAGAGCGCAGTGGAGAGTGG
ACTCAAACGGGGCACCCAAGACGATCGCAGACTCGGCCACGAGCCCCAAGCTCCTCTATGTGGATAGAGT
TGTTCAGGAAATTCTGGAAACCGAAAGGACTTATGTACAAGATTTAAAAAGCATCGTAGAGGATTACCTT
GACTGCATCAGGGACCAAACAAAACTTCCCCTGGGGACCGAAGAAAGATCAGCCCTTTTTGGAAACATAC
AGGATATCTACCACTTCAATAGTGAACTTCTGCAAGATTTGGAAAACTGTGAAAATGATCCTGTGGCCAT
AGCAGAGTGTTTTGTGTCCAAGAGTGAAGAGTTCCACATTTATACCCAGTATTGCACTAACTATCCAAGG
TCCGTGGCTGTGCTAACAGAGTGTATGAGGAACAAGATACTGGCCAAATTCTTCAGGGAGCGTCAGGAAA
CTCTGAAACACTCGCTGCCTCTGGGGTCCTATCTCTTGAAACCAGTTCAGCGGATTCTCAAGTATCATCT
CCTTCTGCATGAAATAGAAAACCACCTTGATAAGGACACAGAAGGCTATGATGTGGTGCTTGATGCTATA
GACACAATGCAGCGAGTCGCCTGGCATATCAATGACATGAAGCGGAAACACGAGCACGCGGTCCGGTTAC
AGGAGATACAGAGTTTGCTCACTAACTGGAAGGGGCCAGACCTGACCAGCTACGGGGAACTGGTGCTTGA
GGGAACCTTCCGCATCCAGCGAGCCAAGAATGAGCGGACGCTCTTCCTCTTCGACAAGCTGCTGCTCATC
ACGAAGAAGAGAGATGACACGTTTACATACAAAGCTCACATCCTGTGTGGCAACCTCATGCTTGTGGAGG
TGATTCCAAAAGAGCCGCTCAGCTTCAGCGTCTTCCACTACAAGAATCCCAAGCTGCAGCACACAGTCCA
GGCCAAATCCCAGCAAGACAAACGCCTCTGGGTTCTGCACCTAAAGAGACTGATTCTGGAGAACCATGCA
GCCAAGATTCCAGCTAAGGCCAAGCAAGCAATCCTTGAAATGGATGCCATTCATCATCCAGGCTTCTGTT
ACAGTCCTGAGGGAGGGACGAAAGCACTGTTCGGCTCTAAAGAAGGTTCTGCTCCATATCGGCTGAGAAG
AAAATCTGAACCTTCCTCACGGTCACATAAAGTTTTGAAGACCAGTGAAACAGCACAAGACATCCAAAAG
GTTTCTAGAGAGGAAGGATCTCCCCAGCTGTCTTCAGCAAGGCCGTCTCCTGCCCAGAGAAATAGTCAGC
CTAGCAGTTCTACCATGATCAGCGTGCTTCGAGCGGGTGGAGCTCTCAGAAACATCTGGACCGATCACCA
GATCAGGCAAGCCTTGTTTCCCAGCCGACGGTCCCCGCAGGAGAATGAGGATGATGAAGATGATTATCAG
ATGTTCGTGCCGTCATTTTCCTCCTCAGATCTGAACTCTACCAGACTATGTGAAGATAGCACTTCTAGTC
GCCCTTGCAGCTGGCATATGGGACAGATGGAGTCCACAGAGACCTCCAGCTCTGGTCACAGGATTGTCAG
GCGGGCCAGCAGTGCTGGGGAGAGCAACACATGCCCTCCTGAAATAGGAACTAGTGACAGAACTAGGGAA
CTGCAGAACAGCCCCAAAACAGAAGGGCAGGAGGAGATGACTCCCTTTGGGTCATCCATAGAGTTGACTA
TTGATGACATAGACCATGTCTATGATAACATCAGTTATGAGGACTTAAAACTAATGGTTGCTAAGCGGGA
AGAAGCTGAATCCACTCCCTCTAAATCAGCCAGGGACTCCGTTCGCCCCAAGAGCACCCCAGAGTTAGCC
TTCACAAAGAGGCAAGCTGGCCACAGTAAGGGCTCTCTTTACGCACAAACAGATGGCACCCTCTCAGGTG
GAGAGGCATCCAGCCAAAGCACGCATGAACTCCAAGCGGTTGAGGAGAACATCTATGACACCATAGGGCT
CCCAGATCCTCCGTCGCTGGGTTTTAAGTGCAGCAGCCTAAAGCGTGCAAAGCGGAGCACCTTTTTGGGT
CTGGAGGCCGACTTCGTGTGCTGTGACAGCCTGAGGCCATTTGTTTCCCAAGACAGCCTCCAGCTCAGTG
AGGACGAAGCCCCTTACCATCAGGCCACTCCCGATCATGGTTATCTGAGTTTGCTGTATGACTCTCCCAG
TGGTAACTTGTCTATGCCTCATAAGCCTGTATCTGATAAACTGTCCGAAGAAGTAGATGAAATCTGGAAT
GACCTGGAAAATTACATCAAGAAAAATGAAGACAAGGCCAGAGACCGTCTCCTGGCAGCGTTTCCTGTGA
GCAAGGATGATGTGCCAGACAGGCTGCACGCAGAGAGCACCCCTGAGCTGAGCCGGGACGTGGGGCGCTC
TGTGTCCACGCTGTCCCTGCCTGAGAGCCAGGCTCTCCTCACGCCCGTGAAGAGCAGGGCTGGCAGAGCC
AGCCGCGCCAACTGCCCCTTTGAGGAAGACCTGATTTCTAAAGAAGGCTCCTTTATGAGCCTTAACCGGC
TTTCTCTGGCTAGTGAAATGCCCCTCATGGACAATCCCTACGACCTGGCCAACAGTGGCCTGTCTCAAAC
AGACCCAGAAAACCCTGACCTGGGGATGGAGGCCACAGATAAGACAAAAAGCAGGGTGTTTATGATGGCT
CGGCAGTACAGTCAGAAGATTAAGAAGGCGAATCAACTTTTAAAAGTGAAAAGTCTGGAGCTGGAGCAGC
CGCCGGCCAGTCAGCATCAGAAATCCATGCACAAAGACCTGGCTGCCATCTTGGAAGAGAAGAAGCAAGG
AGGGCCCGCCATTGGTGCCAGGATTGCTGAGTATTCCCAGTTGTATGACCAGATTGTATTCAGAGAGTCT
CCCTTGAAAATTCAGAAGGATGGCTGGGCCAGCCCTCAAGAATCCTCCCTCCTGAGGTCTGTGTCACCTT
CCCAGGTCCACCATGGTAGTGGAGACTGGCTTCTGCATTCAACCTATAGTAATGGAGAGTTAGCAGATTT
CTGTCTCCCACCAGAGCAAGACTTGAGGTCAAGATATCCCACGTTTGAGATCAATACAAAAAGTACTCCC
AGGCAATTGTCCGCAGCTTGCTCTGTGCCTTCTCTTCAAACCTCTGACCCTCTGCCAGGCTCTGTGCAGA
GATGCAGCGTGGTAGTAAGTCAGCCCAACAAAGAGAACTGGTGTCAGGACCATCTTTACAACTCCTTGGG
TCGGAAAGGGATCAGCGCTAAATCTCAGCCTTATCACAGGTCCCAGTCATCTTCCTCCGTCTTGATCAAC
AAATCAATGGATTCCATCAACTACCCTAGTGATGTGGGAAAGCAGCAGCTGCTGTCTTTACACAGAAGTT
CAAGGTGTGAGAGTCACCAGGACTTGCTGCCAGATATTGCTGACTCGCATCAACAGGGCACTGAAAAACT
CTCAGATCTCACACTCCAAGACTCACAGAAAGTTGTGGTGGTCAATAGAAATTTACCCTTAAATGCCCAA
ATTGCAACACAGAATTATTTTTCCAATTTCAAAGAGACTGATGGAGATGAAGATGACTATGTGGAAATCA
AGTCAGAAGAAGATGAGTCGGAGTTGGAGCTATCTCACAATCGTAGAAGGAAATCTGACTCAAAGTTTGT
GGATGCTGACTTTTCTGATAATGTCTGCAGCGGCAACACATTGCATTCTTTGAATAGTCCGCGCACTCCA
AAAAAGCCGGTTAACAGCAAACTTGGCCTTTCACCATATCTGACACCATATAATGATTCTGACAAACTGA
ATGACTATCTTTGGAGGGGGCCATCTCCCAATCAACAAAATATTGTCCAGTCTCTAAGGGAAAAATTTCA
GTGTCTCAGTTCAAGCAGCTTTGCTTAA

Translation (1385 aa):
MELSDSDRPVSFGSTSSSASSRDSHGSFGSRMTLVSNSHMGLFNQDKEVGAIKLELIPARPFSSSELQRD
NPATGQQNADEGSERPPRAQWRVDSNGAPKTIADSATSPKLLYVDRVVQEILETERTYVQDLKSIVEDYL
DCIRDQTKLPLGTEERSALFGNIQDIYHFNSELLQDLENCENDPVAIAECFVSKSEEFHIYTQYCTNYPR
SVAVLTECMRNKILAKFFRERQETLKHSLPLGSYLLKPVQRILKYHLLLHEIENHLDKDTEGYDVVLDAI
DTMQRVAWHINDMKRKHEHAVRLQEIQSLLTNWKGPDLTSYGELVLEGTFRIQRAKNERTLFLFDKLLLI
TKKRDDTFTYKAHILCGNLMLVEVIPKEPLSFSVFHYKNPKLQHTVQAKSQQDKRLWVLHLKRLILENHA
AKIPAKAKQAILEMDAIHHPGFCYSPEGGTKALFGSKEGSAPYRLRRKSEPSSRSHKVLKTSETAQDIQK
VSREEGSPQLSSARPSPAQRNSQPSSSTMISVLRAGGALRNIWTDHQIRQALFPSRRSPQENEDDEDDYQ
MFVPSFSSSDLNSTRLCEDSTSSRPCSWHMGQMESTETSSSGHRIVRRASSAGESNTCPPEIGTSDRTRE
LQNSPKTEGQEEMTPFGSSIELTIDDIDHVYDNISYEDLKLMVAKREEAESTPSKSARDSVRPKSTPELA
FTKRQAGHSKGSLYAQTDGTLSGGEASSQSTHELQAVEENIYDTIGLPDPPSLGFKCSSLKRAKRSTFLG
LEADFVCCDSLRPFVSQDSLQLSEDEAPYHQATPDHGYLSLLYDSPSGNLSMPHKPVSDKLSEEVDEIWN
DLENYIKKNEDKARDRLLAAFPVSKDDVPDRLHAESTPELSRDVGRSVSTLSLPESQALLTPVKSRAGRA
SRANCPFEEDLISKEGSFMSLNRLSLASEMPLMDNPYDLANSGLSQTDPENPDLGMEATDKTKSRVFMMA
RQYSQKIKKANQLLKVKSLELEQPPASQHQKSMHKDLAAILEEKKQGGPAIGARIAEYSQLYDQIVFRES
PLKIQKDGWASPQESSLLRSVSPSQVHHGSGDWLLHSTYSNGELADFCLPPEQDLRSRYPTFEINTKSTP
RQLSAACSVPSLQTSDPLPGSVQRCSVVVSQPNKENWCQDHLYNSLGRKGISAKSQPYHRSQSSSSVLIN
KSMDSINYPSDVGKQQLLSLHRSSRCESHQDLLPDIADSHQQGTEKLSDLTLQDSQKVVVVNRNLPLNAQ
IATQNYFSNFKETDGDEDDYVEIKSEEDESELELSHNRRRKSDSKFVDADFSDNVCSGNTLHSLNSPRTP
KKPVNSKLGLSPYLTPYNDSDKLNDYLWRGPSPNQQNIVQSLREKFQCLSSSSFA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH