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Report for CCDS89906.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89906.1 Public Mus musculus 5 Cfap99 23 108 98 CCDS HistoryNCBI Gene:100862066Re-query CCDS DB by CCDS ID:89906.1Re-query CCDS DB by GeneID:100862066See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 89906.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000207754.1 ENSMUSP00000146999.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207754.1Link to Ensembl Protein Viewer:ENSMUSP00000146999.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000207754Re-query CCDS DB by Protein ID:ENSMUSP00000146999
Original member Current member NCBI NM_001370805.1 NP_001357734.1 Accepted alive Link to Nucleotide Sequence:NM_001370805.1Link to Protein Sequence:NP_001357734.1Re-query CCDS DB by Nucleotide ID:NM_001370805Re-query CCDS DB by Protein ID:NP_001357734Link to BLAST:NP_001357734.1

Chromosomal Locations for CCDS 89906.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 34297509 34297622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34301377 34301521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34302554 34302648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34305344 34305456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34307886 34308063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34310008 34310088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34310270 34310344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34311351 34311422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34311657 34311745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34314184 34314388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34322953 34323094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34323317 34323468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34325008 34325213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34326893 34327055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34327211 34327327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1947 nt):
ATGACCTACTATGAAAAATGCATTGAGATTGTGATAAAGCAGCTTGACAAATTTAAGCCTGGAAAGGACA
ATCCTGAGCAATTCGTGGAGACAGTATTCACCTCCTTACAGCAGACTCTGAGCCCACAGAAGTTTGGGTT
TGTTTTGGAGGTTCTGTCTGGCTGCCTTGAATACCACAAGTTACTGACCATCGTGGTGGATGCCTTCTAT
GCACGGGATGGCCATACCTGCCTGTGGTCCGACTACAGCCTCTTTGAGGTGATCTGCTACCTGGCCATCT
TCCAGCTGGAGGAGCTTGGCTTCCAGCTTTTCTGCAGCATCATCAAGTCTCAGCCTGTTCGTAAGATGTG
CAAGTTCCTCAGATTCTTCTTTAACCCCTTGAACCTGAGCTCATGGATCAAAGACGAGTGGAGCCTCATC
TACGAAACAGCCCATGTGATGGAGAACTGGATTGACCCTCTGTTGAGATGGCAGCCAGAGGTCCAGAAGC
TGATCAAACAACTGGAGGGAGTACCAACCGATCAAATTCCTGTCTTGAAGACCAAGGCCAAAGTCACAGT
GCCCAAGGAATTCAACCTGACTGTCCCAAGGCCCCGCGCCATTACAATGCCTGAGCCTGTCCCCACTATG
GACAAGCCGAGACCTGTCCCTCAGAGCACCTATAAGGAGCCCAAGGAGCAGAAGCTTCTGCAGATCATCA
AGACATGCAACCGCCGGACAGCTGAGGAGCTGCTGCTGAAAGCCAACATGGAAGAGCTACAGTGTGCCAT
GCCCCGGGTGCAGAGGGAGCCACAAGAACAGGACGTGGAGAAGCAGCTGTGGCATCAGTCAGTACCCCAC
ATCCGTAGGACTCCAAATCTGACCTTCTATAAGCCTAACAACCTCCCGGTCAAGCTGAACACAGCCACCA
TCCTTCGAGAAGGGGCCTTATACCAGCGGCAGGTGGAGAAGGAGCTGCAGAGAGTTGATAAACTTGTGGA
TGGGGCTGGGGACTTCTCTGAATTCCTTAAGTGGCAGAAGAAGATGCAGGCACAGGACCTAGAGGAGCAG
CTGGCTGCAGGCGAGTGCCGGCGGCTTCAGGGAAAGCTGAGCCACGAGGAGGCCATCTTGGCCCGGCAGA
ACCTCATGCAGGAAAACAAGCAGAAGGCCGACCGGCAGAAGGAGGAGACAGCTGAGCTAATGCTGCAGTG
TGCTGAGAGGCGCTTGCAAGAGGAGAAGGCCATGAAAGAGCTGGTGGAGCAGGTCACAGAGGCACAGAAG
AATGTCAAGATAGTCCAAACGAAGCTCGTGAAGGGCCGGCAGCAGATAGTTCAGGAGGTGATAGAGGAGA
GCCGGGAGTTGCTACAGCGTAGTGCAAAGGAAGCCAAAGAGGAACAGAAGCGTCGCTGTGAGCTCATTGC
TCACCTTCGTGCCATGGAGACACAGCCCACACGCAAGGGGAAGCTGGTGGACCTTACCCAGATCCCAGGC
TATGGTCTGGAAGGTGAGATGTCTGTTGTGGAACTTCGAGAACGGCTGGCCATGCTCAAAGAGACCCAGA
AACGAGAGCAAGAGGAGAAGCGGGATCAAATCATCCAGGACAAACGAGCCAAGAGCCAAATGATACAGAA
CACAGTGGAACAGATCTCACTGTGCCGCGCAGCCATGGGCAGGACCGCAGCCTTGAGGTGGGAGGAAAAG
AAGGCCCAGGCTACAAGCCCTGGGACACCCTCCCAGGATGAGCGCGTGCTGGAGCTGAAGCGCAAAATGG
AGGAGAGGGCAGCTGAACGCCGCAGGCAGACAGCACCGCAGCTCACGTCACCGCCCCGGGCCCTACGTCC
AAATCAGCGGGCGCAGGAGGAGATGCAGCACTGGCTGGAGCTGGACCAGAGTCGAGAGCGCAGGCTGCGG
GCAAGGCAAGAGGCAAATCGCACCTGCCACGCTACCCATCACCTAGAGGCTTCCTGA

Translation (648 aa):
MTYYEKCIEIVIKQLDKFKPGKDNPEQFVETVFTSLQQTLSPQKFGFVLEVLSGCLEYHKLLTIVVDAFY
ARDGHTCLWSDYSLFEVICYLAIFQLEELGFQLFCSIIKSQPVRKMCKFLRFFFNPLNLSSWIKDEWSLI
YETAHVMENWIDPLLRWQPEVQKLIKQLEGVPTDQIPVLKTKAKVTVPKEFNLTVPRPRAITMPEPVPTM
DKPRPVPQSTYKEPKEQKLLQIIKTCNRRTAEELLLKANMEELQCAMPRVQREPQEQDVEKQLWHQSVPH
IRRTPNLTFYKPNNLPVKLNTATILREGALYQRQVEKELQRVDKLVDGAGDFSEFLKWQKKMQAQDLEEQ
LAAGECRRLQGKLSHEEAILARQNLMQENKQKADRQKEETAELMLQCAERRLQEEKAMKELVEQVTEAQK
NVKIVQTKLVKGRQQIVQEVIEESRELLQRSAKEAKEEQKRRCELIAHLRAMETQPTRKGKLVDLTQIPG
YGLEGEMSVVELRERLAMLKETQKREQEEKRDQIIQDKRAKSQMIQNTVEQISLCRAAMGRTAALRWEEK
KAQATSPGTPSQDERVLELKRKMEERAAERRRQTAPQLTSPPRALRPNQRAQEEMQHWLELDQSRERRLR
ARQEANRTCHATHHLEAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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