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Report for CCDS15810.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15810.1 Public Mus musculus 2 Lcn4 23 108 98 CCDS HistoryNCBI Gene:16821Re-query CCDS DB by CCDS ID:15810.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 15810.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028283.1 ENSMUSP00000028283.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028283.1Link to Ensembl Protein Viewer:ENSMUSP00000028283.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000028283Re-query CCDS DB by Protein ID:ENSMUSP00000028283
Original member Current member NCBI NM_010695.1 NP_034825.1 Accepted alive Link to Nucleotide Sequence:NM_010695.1Link to Protein Sequence:NP_034825.1Re-query CCDS DB by Nucleotide ID:NM_010695Re-query CCDS DB by Protein ID:NP_034825Link to BLAST:NP_034825.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034825.1 185 Q62472 185 100% 0 0

Chromosomal Locations for CCDS 15810.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 26667875 26667897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26668337 26668363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26668565 26668666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26669346 26669456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26670296 26670366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26670602 26670732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26671175 26671267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (558 nt):
ATGAAGAGCCTGCTCCTGACTGTCACACTGTCTAGTCTAGTGGCAACTCTACAGACCTATGATGACCTTC
CCTTCATCTCAGAAGAAGATAAACTCTCAGGTGTCTGGTTCATAAAGGCCACAGTGAGTCAAAGAAGAGA
AGTGGAGGGGGAGACTCTGGTTGCATTTCCTATTAAATTTACATGCCCAGAAGAAGGAACCTTGGAGCTC
AGGCACACTCTCGCATCTAAGGGAGAGTGCATTAATGTAGGAATTCGTTTGCAGAGAACAGAGGAGCCTG
GTCAATACAGTGCCTTTTGGGGCCATACTCTCTTCTATATATATGATCTTCCAGTGAAGGACCACTACAT
CATATACTGTGAAAGCCATCCGTTTCAGAAAATATCCCAATTTGGATATCTCATAGGAAAGTATCCGGAA
GAAAACCAGGATACCTTGGAAGTATTTAAGGAATTCATACAGCATAAAGGATTTCTCCAAGAAAAAATCG
GTGTGCCTGAACAGAGGGATCGGTGTATTCCCATACATGACAGTGCCCACCAGGACCACAAATGCTGA

Translation (185 aa):
MKSLLLTVTLSSLVATLQTYDDLPFISEEDKLSGVWFIKATVSQRREVEGETLVAFPIKFTCPEEGTLEL
RHTLASKGECINVGIRLQRTEEPGQYSAFWGHTLFYIYDLPVKDHYIIYCESHPFQKISQFGYLIGKYPE
ENQDTLEVFKEFIQHKGFLQEKIGVPEQRDRCIPIHDSAHQDHKC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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