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Report for CCDS48896.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48896.1 Public Mus musculus 11 Cisd3 23 108 98 CCDS HistoryNCBI Gene:217149Re-query CCDS DB by CCDS ID:48896.1Re-query CCDS DB by GeneID:217149See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48896.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107583.2 ENSMUSP00000103209.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107583.2Link to Ensembl Protein Viewer:ENSMUSP00000103209.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107583Re-query CCDS DB by Protein ID:ENSMUSP00000103209
Original member Current member NCBI NM_001085500.3 NP_001078969.2 Accepted alive Link to Nucleotide Sequence:NM_001085500.3Link to Protein Sequence:NP_001078969.2Re-query CCDS DB by Nucleotide ID:NM_001085500Re-query CCDS DB by Protein ID:NP_001078969Link to BLAST:NP_001078969.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078969.2 137 B1AR13 137 100% 0 0

Chromosomal Locations for CCDS 48896.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 97686102 97686215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97686501 97686620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97688268 97688447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (414 nt):
ATGGGCTTCCGGCGTCTCTCCTTCCCCACTGATTTTATTTTTCTGTTTCCAAATCATATCTGCCTGCCTG
CCTTGTCGAAGCCGTATCAGAGGCGGGAAATCTCTTCTTGGCTGGCCCGATGGTTCCCCAAAGACCCAGC
CAAGCCAGTGGTGGCACAGAAGACACCCATCAGATTGGAGCTGGTTGCCGGGAAAACCTACAGGTGGTGT
GTATGTGGCCGAAGCAAGAATCAGCCCTTCTGTGATGGCTCCCACTTCTTCCAGCGTACTGGCCTTTCTC
CACTCAAGTTCAAGGCCCAAGAGACACGCACAGTGGCCCTATGTACCTGCAAGGCCACTCAGCGGCCCCC
TTACTGTGACGGTACCCACAAGAGTGAGCAGGTACAGAAAGCAGAAGTAGGTTCCCCACTCTGA

Translation (137 aa):
MGFRRLSFPTDFIFLFPNHICLPALSKPYQRREISSWLARWFPKDPAKPVVAQKTPIRLELVAGKTYRWC
VCGRSKNQPFCDGSHFFQRTGLSPLKFKAQETRTVALCTCKATQRPPYCDGTHKSEQVQKAEVGSPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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