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Report for CCDS43378.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43378.1 Public Homo sapiens 5 RBM27 24 110 108 CCDS HistoryNCBI Gene:54439Re-query CCDS DB by CCDS ID:43378.1Re-query CCDS DB by GeneID:54439See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43378.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265271.7 ENSP00000265271.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000265271.7Link to Ensembl Protein Viewer:ENSP00000265271.5Re-query CCDS DB by Nucleotide ID:ENST00000265271Re-query CCDS DB by Protein ID:ENSP00000265271
Original member Current member NCBI NM_018989.2 NP_061862.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018989.2Link to Protein Sequence:NP_061862.1Re-query CCDS DB by Nucleotide ID:NM_018989Re-query CCDS DB by Protein ID:NP_061862Link to BLAST:NP_061862.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061862.1 1060 Q9P2N5 1060 100% 0 0

Chromosomal Locations for CCDS 43378.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 146203766 146203824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146218985 146219103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146223403 146223527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146228946 146229037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146229717 146229910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146230657 146230917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146233450 146233743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146237298 146237432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146251711 146251875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146254943 146255092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146258449 146258593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146260745 146260898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146261510 146261806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146263491 146263631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146267649 146267768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146269207 146269281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146269420 146269584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146270954 146271058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146271483 146271674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146284622 146284732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146285947 146286030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3183 nt):
ATGCTCATAGAGGATGTGGATGCCCTCAAGTCCTGGCTGGCCAAGTTACTGGAGCCGATATGTGATGCTG
ATCCTTCAGCCTTAGCCAACTATGTTGTAGCACTGGTCAAGAAGGACAAACCTGAGAAAGAATTAAAAGC
CTTTTGTGCTGATCAACTTGATGTCTTTTTACAAAAAGAAACTTCAGGTTTTGTGGACAAACTATTTGAA
AGTCTCTATACTAAGAACTACCTTCCACTTTTGGAACCAGTAAAGCCTGAGCCAAAACCACTAGTCCAAG
AAAAAGAAGAAATTAAAGAAGAGGTATTTCAGGAGCCAGCAGAGGAAGAACGAGATGGCAGAAAAAAGAA
ATATCCTAGTCCCCAGAAGACTCGTTCAGAATCTAGTGAACGAAGGACACGTGAGAAAAAAAGAGAAGAC
GGGAAATGGAGAGACTATGACCGGTACTATGAGCGGAATGAATTGTACCGTGAGAAGTATGACTGGAGAA
GAGGCAGGAGTAAGAGTCGGAGTAAGAGTCGAGGCCTGAGTCGCAGTAGAAGCCGAAGTAGGGGGCGCAG
CAAAGACCGGGATCCAAATAGGAATGTTGAGCACAGGGAAAGATCGAAGTTTAAGAGTGAAAGGAATGAC
CTGGAGAGTTCCTATGTGCCTGTGTCTGCACCACCTCCAAACTCTTCTGAGCAGTATTCCTCTGGGGCAC
AGTCTATTCCCAGCACTGTTACTGTGATCGCACCTGCTCACCACTCTGAAAACACAACTGAGAGTTGGTC
TAATTACTATAACAATCATAGCTCTTCCAATTCTTTTGGTCGAAACCTACCACCAAAGAGGCGATGCAGA
GATTATGATGAAAGAGGATTTTGTGTACTTGGTGACCTTTGTCAGTTTGATCATGGAAATGATCCCCTAG
TTGTTGATGAAGTTGCTCTGCCAAGTATGATTCCTTTCCCACCCCCTCCTCCTGGGCTTCCTCCTCCACC
ACCTCCTGGAATGTTAATGCCTCCAATGCCAGGTCCAGGCCCAGGCCCGGGCCCAGGTCCAGGCCCAGGC
CCGGGCCCAGGTCCAGGTCCTGGCCATAGTATGAGACTTCCTGTTCCCCAAGGACATGGTCAGCCTCCAC
CATCCGTTGTGCTTCCCATACCAAGACCACCTATAACACAATCAAGCTTGATAAACAGCCGTGACCAGCC
TGGGACAAGTGCAGTGCCCAATCTTGCATCAGTGGGAACAAGACTACCTCCTCCTTTACCCCAGAACCTC
CTTTACACAGTATCAGAACGACAGCCCATGTACTCTCGTGAACATGGTGCTGCTGCATCTGAGCGACTTC
AGTTGGGGACACCGCCTCCTCTGTTGGCAGCTCGTTTGGTGCCACCTCGAAACCTCATGGGATCCTCCAT
TGGATACCATACCTCAGTCTCCAGCCCTACCCCTCTGGTTCCAGATACATATGAACCAGATGGTTACAAC
CCAGAAGCTCCTAGTATTACTAGTTCTGGTAGATCTCAGTACAGACAGTTCTTTTCAAGAACTCAGACAC
AGCGTCCCAATCTGATTGGCCTAACATCTGGAGATATGGATGTAAATCCAAGAGCTGCTAACATTGTGAT
CCAGACTGAACCACCAGTTCCTGTTTCGATTAATAGCAACATAACCAGAGTAGTTCTTGAACCAGATAGT
CGAAAAAGAGCTATGAGTGGTTTGGAAGGGCCACTCACAAAGAAACCTTGGCTGGGAAAGCAAGGAAATA
ACAATCAAAATAAACCAGGGTTCTTACGAAAGAATCAGTATACAAACACCAAATTAGAAGTCAAGAAAAT
CCCTCAGGAATTGAACAACATTACCAAGCTCAATGAACACTTCAGCAAATTTGGAACTATTGTTAATATC
CAGGTTGCTTTTAAGGGTGACCCAGAAGCAGCCCTAATCCAATATCTTACCAATGAGGAGGCCAGGAAAG
CCATTTCTAGCACAGAAGCAGTTCTAAACAACCGATTCATTCGAGTCTTGTGGCATAGGGAAAATAATGA
GCAACCGACACTACAGTCCTCAGCACAGCTGCTCCTGCAACAACAGCAAACACTTAGTCACCTCTCACAG
CAGCACCATCACCTGCCACAGCATCTACATCAGCAGCAGGTGCTAGTGGCCCAGTCTGCTCCTTCAACAG
TGCACGGAGGTATCCAGAAGATGATGAGCAAACCACAGACATCAGGTGCATATGTTCTTAACAAAGTTCC
TGTTAAACATCGTCTTGGACATGCAGGTGGTAACCAGAGTGATGCATCACATTTGTTGAATCAGTCTGGT
GGTGCTGGAGAAGATTGCCAGATATTTTCAACTCCAGGCCATCCAAAAATGATTTACAGCTCCTCAAACT
TAAAGACACCTTCAAAGCTCTGTTCAGGGTCTAAATCTCATGATGTTCAAGAAGTGCTTAAAAAAAAACA
GGAAGCAATGAAGTTACAACAAGATATGAGGAAAAAAAGACAGGAAGTGTTAGAAAAGCAAATAGAATGC
CAAAAGATGTTAATATCCAAGTTAGAAAAAAACAAAAACATGAAACCAGAAGAAAGAGCAAATATAATGA
AGACTTTGAAAGAGCTTGGAGAGAAGATCTCACAATTAAAAGATGAATTAAAAACATCTTCTGCAGTCTC
CACACCATCTAAAGTGAAGACAAAAACGGAGGCCCAGAAGGAGTTATTAGATACTGAACTGGACCTCCAC
AAGAGGCTGTCCTCAGGAGAAGACACCACAGAATTACGGAAAAAACTCAGTCAGTTACAGGTTGAGGCTG
CACGGTTAGGTATTTTACCTGTGGGTCGAGGAAAGACCATGTCCTCTCAAGGTCGAGGAAGAGGCCGAGG
GCGTGGAGGAAGAGGAAGGGGCTCACTAAATCACATGGTGGTGGACCATCGTCCCAAAGCACTAACAGTT
GGAGGATTCATTGAGGAAGAAAAAGAAGACTTGCTTCAGCATTTCTCAACCGCAAACCAAGGGCCAAAAT
TTAAAGACCGTCGGCTACAGATATCATGGCACAAGCCCAAGGTACCATCTATATCCACTGAGACTGAAGA
AGAAGAAGTCAAGGAGGAGGAAACAGAAACCTCAGATTTGTTTTTGCCTGATGATGACGATGAAGATGAA
GATGAATATGAGTCTCGCTCATGGCGAAGATGA

Translation (1060 aa):
MLIEDVDALKSWLAKLLEPICDADPSALANYVVALVKKDKPEKELKAFCADQLDVFLQKETSGFVDKLFE
SLYTKNYLPLLEPVKPEPKPLVQEKEEIKEEVFQEPAEEERDGRKKKYPSPQKTRSESSERRTREKKRED
GKWRDYDRYYERNELYREKYDWRRGRSKSRSKSRGLSRSRSRSRGRSKDRDPNRNVEHRERSKFKSERND
LESSYVPVSAPPPNSSEQYSSGAQSIPSTVTVIAPAHHSENTTESWSNYYNNHSSSNSFGRNLPPKRRCR
DYDERGFCVLGDLCQFDHGNDPLVVDEVALPSMIPFPPPPPGLPPPPPPGMLMPPMPGPGPGPGPGPGPG
PGPGPGPGHSMRLPVPQGHGQPPPSVVLPIPRPPITQSSLINSRDQPGTSAVPNLASVGTRLPPPLPQNL
LYTVSERQPMYSREHGAAASERLQLGTPPPLLAARLVPPRNLMGSSIGYHTSVSSPTPLVPDTYEPDGYN
PEAPSITSSGRSQYRQFFSRTQTQRPNLIGLTSGDMDVNPRAANIVIQTEPPVPVSINSNITRVVLEPDS
RKRAMSGLEGPLTKKPWLGKQGNNNQNKPGFLRKNQYTNTKLEVKKIPQELNNITKLNEHFSKFGTIVNI
QVAFKGDPEAALIQYLTNEEARKAISSTEAVLNNRFIRVLWHRENNEQPTLQSSAQLLLQQQQTLSHLSQ
QHHHLPQHLHQQQVLVAQSAPSTVHGGIQKMMSKPQTSGAYVLNKVPVKHRLGHAGGNQSDASHLLNQSG
GAGEDCQIFSTPGHPKMIYSSSNLKTPSKLCSGSKSHDVQEVLKKKQEAMKLQQDMRKKRQEVLEKQIEC
QKMLISKLEKNKNMKPEERANIMKTLKELGEKISQLKDELKTSSAVSTPSKVKTKTEAQKELLDTELDLH
KRLSSGEDTTELRKKLSQLQVEAARLGILPVGRGKTMSSQGRGRGRGRGGRGRGSLNHMVVDHRPKALTV
GGFIEEEKEDLLQHFSTANQGPKFKDRRLQISWHKPKVPSISTETEEEEVKEEETETSDLFLPDDDDEDE
DEYESRSWRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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