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Report for CCDS27649.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27649.1 Public Mus musculus 15 Sun2 23 108 98 CCDS HistoryNCBI Gene:223697Re-query CCDS DB by CCDS ID:27649.1Re-query CCDS DB by GeneID:223697See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27649.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089311.10 ENSMUSP00000086724.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089311.10Link to Ensembl Protein Viewer:ENSMUSP00000086724.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000089311Re-query CCDS DB by Protein ID:ENSMUSP00000086724
Original member Current member NCBI NM_194342.3 NP_919323.2 Accepted alive Link to Nucleotide Sequence:NM_194342.3Link to Protein Sequence:NP_919323.2Re-query CCDS DB by Nucleotide ID:NM_194342Re-query CCDS DB by Protein ID:NP_919323Link to BLAST:NP_919323.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_919323.2 699 Q8BJS4-3 699 100% 0 0

Chromosomal Locations for CCDS 27649.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 79725447 79725560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79726542 79726634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79726791 79726958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79727051 79727166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79727516 79727600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79727863 79728084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79728416 79728581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79729033 79729076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79729481 79729558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79730090 79730344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79734108 79734235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79735846 79735925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79737066 79737159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79738520 79738660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79738820 79739010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79739721 79739845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2100 nt):
ATGTCGAGACGAAGCCAGCGCCTCACTCGCTACTCTCAGGATGATAACGATGGCGGCAGCAGCAGCAGTG
GTGCGAGCTCCGTGGCAGGAAGCCAGGGCACCGTGTTTAAAGACAGTCCTCTCAGGACTTTGAAGAGGAA
ATCCAGCAACATGAAGCACCTGTCCCCAGCTCCACAGCTGGGCCCCTCCTCTGACTCCCACACCTCCTAC
TACAGCGAGTCTGTGGTTCGAGAGTCCTACATCGGCAGCCCCCGGGCTGTGTCCCTCGCCAGGAGTGCCC
TCCTGGATGACCACCTACACAGTGAGCCCTACTGGAGCGGGGACCTTCGGGGGAGGAGGAGGAGAGGAAC
AGGTGGTTCTGAGAGCAGCAAGGCCAATGGGCTCACCGCGGAGAGCAAGGCCTCAGAAGACTTTTTCGGA
TCTTCCTCAGGCTATTCTTCAGAGGATGACCTTGCAGGCCGCCTCTTTGGTCTTCTCTACTGGTGGATTG
GCACCACCTGGTACCGCCTGACAACTGCTGCCTCCCTCCTGGATGTCTTCGTCCTAACCAGGTCCAGGCA
CTTCTCGCTGAACCTGAAGAGTTTTCTGTGGTTCCTTCTGCTCTTGCTACTCCTGACTGGTCTGACCTAC
GGTGCTTGGCATTTTTACCCCTTAGGGCTGCAGACATTGCAACCCGCTGTGGTCTCCTGGTGGGCAGCAA
AAGAGAGCAGGAAGCAGCCAGAGGTGTGGGAATCCAGAGACGCCTCCCAGCACTTCCAGGCTGAGCAGCG
CGTTCTCTCCCGGGTTCACTCTCTGGAGCGGCGTCTGGAAGCCCTTGCTGCAGACTTTTCCTCCAACTGG
CAGAAGGAGGCCATACGGCTGGAACGCCTGGAGCTGCGGCAGGGGGCTGCTGGCCATGGAGGAGGCAGTA
GCCTGAGCCATGAAGATGCCCTGTCTCTCCTAGAAGGGTTGGTGAGCCGCCGCGAGGCTACCCTGAAGGA
GGACTTGCGCAGGGACACAGTGGCTCATATCCAGGAAGAATTGGCTACCCTGAGGGCAGAGCATCACCAA
GACTCGGAAGATCTCTTCAAGAAGATCGTCCAGGCCTCTCAGGAGTCCGAAGCCCGAGTCCAGCAGCTGA
AGACAGAATGGAAAAGCATGACCCAGGAGGCCTTCCAGGAGAGCTCTGTGAAGGAGCTGGGACGGCTGGA
AGCCCAGCTGGCCAGCCTGCGGCAGGAGCTGGCTGCCCTGACTCTGAAGCAGAACTCGGTGGCAGATGAA
GTGGGCCTGCTGCCACAGAAGATCCAGGCTGCCAGGGCTGATGTGGAATCCCAGTTCCCTGACTGGATCA
GGCAGTTCCTTCTTGGAGACAGGGGTGCGCGCAGCGGGCTCCTGCAGAGAGATGAGATGCACGCTCAGCT
GCAGGAGCTGGAGAACAAGATCCTTACCAAGATGGCTGAGATGCAGGGCAAGTCAGCCAGGGAGGCCGCA
GCGTCCCTGGGACAGATACTGCAGAAAGAAGGCATAGTTGGGGTGACAGAGGAGCAGGTGCACCGGATCG
TCAAGCAGGCCCTGCAGCGCTACAGTGAGGACAGGATTGGAATGGTGGATTACGCCCTGGAATCAGGAGG
AGCCAGTGTTATCAGCACCCGCTGCTCTGAGACTTATGAGACCAAGACGGCACTCCTCAGCCTCTTTGGC
ATCCCCCTGTGGTACCACTCCCAGTCACCTCGGGTCATTCTGCAGCCAGATGTGCACCCAGGCAACTGCT
GGGCCTTCCAGGGGCCCCAGGGCTTTGCAGTGGTCCGCCTCTCTGCTCGAATCCGACCTACAGCCGTTAC
CTTAGAGCACGTGCCCAAGGCCTTGTCACCCAACAGCACTATCTCCAGTGCTCCCAAGGACTTCGCCATC
TTTGGCTTCGATGAAGACCTGCAGCAGGAAGGGACACTTCTTGGCACGTTTGCCTACGACCAGGATGGGG
AGCCCATCCAGACCTTCTATTTCCAGGCCTCTAAGATGGCCACATACCAAGTTGTGGAGCTTCGGATCCT
GACCAACTGGGGCCACCCTGAGTACACGTGTATCTACCGCTTCCGGGTGCACGGAGAGCCTGCCCACTAG

Translation (699 aa):
MSRRSQRLTRYSQDDNDGGSSSSGASSVAGSQGTVFKDSPLRTLKRKSSNMKHLSPAPQLGPSSDSHTSY
YSESVVRESYIGSPRAVSLARSALLDDHLHSEPYWSGDLRGRRRRGTGGSESSKANGLTAESKASEDFFG
SSSGYSSEDDLAGRLFGLLYWWIGTTWYRLTTAASLLDVFVLTRSRHFSLNLKSFLWFLLLLLLLTGLTY
GAWHFYPLGLQTLQPAVVSWWAAKESRKQPEVWESRDASQHFQAEQRVLSRVHSLERRLEALAADFSSNW
QKEAIRLERLELRQGAAGHGGGSSLSHEDALSLLEGLVSRREATLKEDLRRDTVAHIQEELATLRAEHHQ
DSEDLFKKIVQASQESEARVQQLKTEWKSMTQEAFQESSVKELGRLEAQLASLRQELAALTLKQNSVADE
VGLLPQKIQAARADVESQFPDWIRQFLLGDRGARSGLLQRDEMHAQLQELENKILTKMAEMQGKSAREAA
ASLGQILQKEGIVGVTEEQVHRIVKQALQRYSEDRIGMVDYALESGGASVISTRCSETYETKTALLSLFG
IPLWYHSQSPRVILQPDVHPGNCWAFQGPQGFAVVRLSARIRPTAVTLEHVPKALSPNSTISSAPKDFAI
FGFDEDLQQEGTLLGTFAYDQDGEPIQTFYFQASKMATYQVVELRILTNWGHPEYTCIYRFRVHGEPAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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