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Report for CCDS48399.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48399.1 Public Mus musculus 1 Lhx4 23 108 98 CCDS HistoryNCBI Gene:16872Re-query CCDS DB by CCDS ID:48399.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48399.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027740.13 ENSMUSP00000027740.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027740.13Link to Ensembl Protein Viewer:ENSMUSP00000027740.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027740Re-query CCDS DB by Protein ID:ENSMUSP00000027740
Original member Current member NCBI NM_010712.2 NP_034842.2 Accepted alive Link to Nucleotide Sequence:NM_010712.2Link to Protein Sequence:NP_034842.2Re-query CCDS DB by Nucleotide ID:NM_010712Re-query CCDS DB by Protein ID:NP_034842Link to BLAST:NP_034842.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034842.2 390 P53776 390 100% 0 0

Chromosomal Locations for CCDS 48399.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 155702222 155702616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155704701 155704872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155705172 155705326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155710113 155710315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155724790 155724961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155741802 155741877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1173 nt):
ATGATGCAGAGCGCGGCTGTCCCCGCGGAGGGGGCTGTCAAGGGGCTCCCGGAGATGCTCGGTGTGCCGA
TGCAACAGATTCCCCAGTGTGCTGGCTGCAACCAACATATCCTGGATAAGTTCATCCTGAAGGTCCTGGA
CAGACACTGGCACAGCTCCTGCCTCAAGTGCGCAGACTGCCAGATGCAGCTGGCTGACAGATGCTTCTCC
AGGGCCGGCAGTGTCTACTGCAAGGAAGATTTCTTCAAACGCTTTGGCACAAAATGCACAGCCTGCCAGC
AGGGCATCCCCCCGACCCAGGTGGTCCGCAAGGCTCAGGACTTTGTCTACCACCTGCACTGCTTTGCCTG
CATCATCTGCAACCGGCAGCTGGCCACGGGGGACGAGTTCTACCTTATGGAGGATGGCCGGCTAGTGTGC
AAAGAAGACTATGAGACAGCCAAGCAAAACGATGACTCGGAGGCTGGGGCTAAGCGACCTCGGACCACCA
TCACAGCAAAGCAGCTGGAGACACTAAAGAACGCATACAAGAACTCCCCAAAGCCTGCCCGGCATGTGAG
AGAGCAGCTCTCCTCCGAGACAGGCCTGGACATGAGAGTAGTACAGGTTTGGTTTCAGAACAGAAGAGCC
AAGGAGAAAAGGCTAAAGAAGGACGCGGGGCGCCATCGCTGGGGCCAGTTCTACAAGAGTGTCAAGAGGA
GCCGGGGAGGCAGCAAGCAGGAGAAGGAGAGCTCAGCAGAGGACTGTGGGGTTAGTGACAGTGAGCTGAG
CTTCCGAGAAGATCAAATACTCTCAGAGCTTGGCCACACCAATAGGATTTATGGCAACGTGGGGGACGTT
ACAGGCGGACAGTTAATGAATGGGAGTTTCTCCATGGATGGGACAGGACAATCCTATCAGGACTTGAGGG
ATGGGAGCCCTTATGGAATCCCCCAGTCTCCGTCCTCCATATCGTCCCTCCCATCCCATGCTCCTTTGCT
CAATGGGCTGGATTACACCGTGGACAGTAATCTGGGCATCATTGCGCATGCAGGGCAGGGAGTCAGCCAG
ACACTGAGAGCCATGGCTGGGGGACCCACCTCTGACCTCTCGACAGGAAGCAGTGTAGGCTACCCTGATT
TTCCAACTAGCCCAGCCTCTTGGCTCGATGAGATGGACCATCCTCCTTTTTAG

Translation (390 aa):
MMQSAAVPAEGAVKGLPEMLGVPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFS
RAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVC
KEDYETAKQNDDSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRA
KEKRLKKDAGRHRWGQFYKSVKRSRGGSKQEKESSAEDCGVSDSELSFREDQILSELGHTNRIYGNVGDV
TGGQLMNGSFSMDGTGQSYQDLRDGSPYGIPQSPSSISSLPSHAPLLNGLDYTVDSNLGIIAHAGQGVSQ
TLRAMAGGPTSDLSTGSSVGYPDFPTSPASWLDEMDHPPF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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