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Report for CCDS29343.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29343.1 Public Mus musculus 18 Lipg 23 108 98 CCDS HistoryNCBI Gene:16891Re-query CCDS DB by CCDS ID:29343.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29343.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066532.4 ENSMUSP00000066536.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066532.4Link to Ensembl Protein Viewer:ENSMUSP00000066536.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000066532Re-query CCDS DB by Protein ID:ENSMUSP00000066536
Original member Current member NCBI NM_010720.3 NP_034850.3 Accepted alive Link to Nucleotide Sequence:NM_010720.3Link to Protein Sequence:NP_034850.3Re-query CCDS DB by Nucleotide ID:NM_010720Re-query CCDS DB by Protein ID:NP_034850Link to BLAST:NP_034850.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034850.3 500 Q9WVG5 500 100% 0 0

Chromosomal Locations for CCDS 29343.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 74941317 74941338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74943340 74943444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74945804 74946022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74947006 74947126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74947973 74948215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74949058 74949279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74954178 74954289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74955419 74955598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74957198 74957379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74960878 74960974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1503 nt):
ATGCGAAACACGGTTTTCCTGCTCGGCTTTTGGAGCGTCTATTGTTACTTCCCGGCGGGAAGTATCACAA
CCTTGCGTCCCCAGGGGTCGCTGCGAGATGAGCATCATAAACCCACTGGAGTACCAGCTACCGCCAGACC
CTCTGTGGCTTTTAACATCCGCACTTCTAAGGACCCAGAGCAGGAAGGGTGTAATCTCTCCCTTGGTGAC
AGCAAACTCTTAGAAAACTGTGGCTTCAACATGACAGCCAAAACCTTCTTCATCATTCATGGATGGACGA
TGAGTGGCATGTTTGAGAGCTGGCTGCATAAACTTGTATCAGCCCTGCAGATGAGAGAGAAAGATGCTAA
CGTCGTGGTGGTTGACTGGCTGCCCCTGGCTCATCAGCTGTACACGGATGCAGTCAATAACACCAGGGTG
GTGGGACAGAGAGTAGCTGGGATGCTTGACTGGCTGCAGGAGAAGGAAGAGTTCTCTCTTGGGAACGTTC
ACTTGATTGGCTACAGCCTTGGAGCACACGTGGCTGGATACGCTGGCAACTTTGTGAAAGGAACAGTGGG
CAGGATCACTGGTCTGGATCCCGCGGGTCCCATGTTTGAAGGGGTGGACATCAACAGAAGGCTGTCCCCG
GACGATGCAGACTTTGTGGATGTCCTGCATACCTACACGCTGTCCTTTGGCTTGAGCATTGGGATTCGGA
TGCCTGTGGGTCACATTGACATCTATCCCAATGGCGGTGACTTCCAGCCAGGCTGTGGATTCAATGATGT
CATCGGATCTTTTGCATATGGAACAATCTCAGAGATGGTGAAATGCGAGCACGAGCGAGCCGTACACCTC
TTTGTCGACTCTCTGGTGAATCAGGACAAGCCCAGCTTTGCCTTCCAGTGCACAGACTCCAGCCGCTTCA
AAAGGGGAATCTGCCTCAGCTGCCGGAAGAACCGTTGTAATAACATTGGCTACAACGCCAAGAAAATGAG
AAAGAAGAGGAATAGCAAAATGTATTTAAAAACCCGGGCTGGCATGCCTTTCAAAGTTTACCATTACCAG
CTGAAAGTTCACATGTTCTCTTACAATAACAGTGGGGACACCCAGCCCACCCTCTACATTACCCTGTATG
GTAGCAACGCAGACTCCCAGAACCTGCCCTTGGAAATAGTGGAGAAGATTGAGCTGAATGCCACAAACAC
CTTCCTTGTCTACACTGAGGAGGACTTGGGCGATCTCTTGAAGATGCGACTTACCTGGGAGGGGGTAGCC
CATTCCTGGTACAACCTGTGGAATGAGTTTCGCAACTACCTGTCTCAACCCAGCAACCCCTCGAGGGAGC
TGTACATCCGGCGAATTCGTGTCAAATCTGGGGAAACCCAGCGCAAAGTGACATTTTGCACTCAAGACCC
AACGAAGAGTAGCATCTCCCCTGGCCAGGAGCTGTGGTTTCACAAGTGTCAGGATGGCTGGAAAATGAAA
AACAAAACCAGTCCCTTTGTGAACTTGGCCTGA

Translation (500 aa):
MRNTVFLLGFWSVYCYFPAGSITTLRPQGSLRDEHHKPTGVPATARPSVAFNIRTSKDPEQEGCNLSLGD
SKLLENCGFNMTAKTFFIIHGWTMSGMFESWLHKLVSALQMREKDANVVVVDWLPLAHQLYTDAVNNTRV
VGQRVAGMLDWLQEKEEFSLGNVHLIGYSLGAHVAGYAGNFVKGTVGRITGLDPAGPMFEGVDINRRLSP
DDADFVDVLHTYTLSFGLSIGIRMPVGHIDIYPNGGDFQPGCGFNDVIGSFAYGTISEMVKCEHERAVHL
FVDSLVNQDKPSFAFQCTDSSRFKRGICLSCRKNRCNNIGYNAKKMRKKRNSKMYLKTRAGMPFKVYHYQ
LKVHMFSYNNSGDTQPTLYITLYGSNADSQNLPLEIVEKIELNATNTFLVYTEEDLGDLLKMRLTWEGVA
HSWYNLWNEFRNYLSQPSNPSRELYIRRIRVKSGETQRKVTFCTQDPTKSSISPGQELWFHKCQDGWKMK
NKTSPFVNLA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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