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Report for CCDS55259.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55259.1 Public Homo sapiens 8 CNBD1 24 110 108 CCDS HistoryNCBI Gene:168975Re-query CCDS DB by CCDS ID:55259.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55259.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000518476.6 ENSP00000430073.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000518476.6Link to Ensembl Protein Viewer:ENSP00000430073.1Re-query CCDS DB by Nucleotide ID:ENST00000518476Re-query CCDS DB by Protein ID:ENSP00000430073
Original member Current member NCBI NM_173538.3 NP_775809.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173538.3Link to Protein Sequence:NP_775809.1Re-query CCDS DB by Nucleotide ID:NM_173538Re-query CCDS DB by Protein ID:NP_775809Link to BLAST:NP_775809.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775809.1 436 Q8NA66 436 100% 0 0

Chromosomal Locations for CCDS 55259.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 86866496 86866583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 86887542 86887611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 86905081 86905194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 86939596 86939754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 87205993 87206138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 87236919 87237112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 87284678 87284815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 87286539 87286671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 87351685 87351794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 87353636 87353786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 87382620 87382627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGCCGATGTCTTCTCTTCCAGCAGCTATTTTGTCTCACATGACAGCTATTAACAATGTGCCTCCTCCTC
CACTTCACAGTATACCAAACTTGAAAAAGTCTAAGCACATTAATTATGGCCAGTTGAATGCATTATGCCA
CATTAGAGGACAACACAGCCGGAGTATGAGCAATATCTTATCAGCTCACGATACATTTATGAAGCAATAT
CCTAAAGTATTCCTGCACCAAAAACCCAGACTTCCTAAACTTTTCAAACAGGAGGAACAAAGGGAACTCA
ATGAAGGCAAAGAGGAAAGTCAACATCAACAACCTGATGATTCTAACAATATAGCTGTCCATGTTCAGAG
AGCACATGGTGGCCATATTTTATATAGACCAAAAAGAGCCACAGAGAAATTTGAAGAATTCCTAGCTATC
TTAAAGAAATTGCCCATTCACAGGACGCCATATGAACACAAAACTGTGTGGAAGTTCCTGAAAACAATTC
CAGATTTAACCTTTCAGCTAAATGATAAGCATCTGAAAACACTTAGTAAGACTGTCTTTTCCGAAACCTG
GTTGAAAGGCAGCACAGTGGTTGCAAATGATGGATTTTATGTAATACTGAAAGGCCTAGCTCGACCTCAA
ACAAACGTGTATAAAAATCTGATTGAAGGAAGTGATTCACCAGACTCGTTCATATCTCAGAGTTTCCACA
GCTTCATTTGGAGTGAAGAATTCAAAAACTCTACACTTGCTGAGATGTACCTACCTTCATATGACTCAAT
GCTTAGCAAATGGAGTACCTTTGGGACTCTGGAAGTTATGCCTCAGAATGAATCGGAAACACAGATGTTC
TCGGTGGTGACAGAAGACGATTGTGAAATTCTTAAAATCCCAGCAAAGGGATATGCAAAGATAAAGGAGG
AAAAAATAAAACTTGAAAATATGCAAAAGTTGAAATTAATCCGTATGTGTCCTTATTATGAGGAATGGCC
TACTTTATCCATATATGAGCTAATTGCACTCCTTAAATGGAAAAAATTTCCTCCAGGTCATGTGATAGTG
GAAAGTGGAAATATAATTTCTTTTGTGGGTTATATTAACTCTGGATGCTGTAACATTTATAGAAGTATTA
TAGGATTTGTGAAACTACGATCAAATAAAGTGAAAAGATCTCAAAAACTTGTTTATATGGGGAAACTTAA
GGAGAAGGAGTCCTTTGGTGAGATTAGCGTCCTTCTTCAAGTTCCTTTCACGTGCACAATCATTACCAAA
AAAGAAGTTGAGATGGCAATCATTGAAGATAAGGACCTATTTGTGGCCTAG

Translation (436 aa):
MPMSSLPAAILSHMTAINNVPPPPLHSIPNLKKSKHINYGQLNALCHIRGQHSRSMSNILSAHDTFMKQY
PKVFLHQKPRLPKLFKQEEQRELNEGKEESQHQQPDDSNNIAVHVQRAHGGHILYRPKRATEKFEEFLAI
LKKLPIHRTPYEHKTVWKFLKTIPDLTFQLNDKHLKTLSKTVFSETWLKGSTVVANDGFYVILKGLARPQ
TNVYKNLIEGSDSPDSFISQSFHSFIWSEEFKNSTLAEMYLPSYDSMLSKWSTFGTLEVMPQNESETQMF
SVVTEDDCEILKIPAKGYAKIKEEKIKLENMQKLKLIRMCPYYEEWPTLSIYELIALLKWKKFPPGHVIV
ESGNIISFVGYINSGCCNIYRSIIGFVKLRSNKVKRSQKLVYMGKLKEKESFGEISVLLQVPFTCTIITK
KEVEMAIIEDKDLFVA


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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