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Genome Displays Related Resources Gene HomoloGene MANE RefSeq
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Report for CCDS38908.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
38908.1 |
Public |
Mus musculus |
4 |
Arid1a |
23 |
108 |
98 |
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Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47
Review status: Provisional (this record has not been manually reviewed by the collaboration) Sequence IDs included in CCDS 38908.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
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EBI |
ENSMUST00000105897.9 |
ENSMUSP00000101517.3 |
Accepted |
alive |
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NCBI |
NM_001080819.2 |
NP_001074288.1 |
Accepted |
alive |
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RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001074288.1 |
2283 |
A2BH40-1 |
2283 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 38908.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (6852 nt): ATGGCCGCGCAGGTCGCCCCCGCCGCCGCCAGCAGCCTGGGCAACCCGCCGCCGCCGCCCTCGGAGCTGA AGAAAGCCGAGCAGCAACAGCGGGAGGAGGCGGGGGGCGAGGCGGCGGCGGCAGCGGCCGAGCGCGGGGA AATGAAGGCAGCCGCCGGGCAGGAGAGCGAGGGCCCCGCCGTGGGGCCGCCGCAGCCGCTGGGAAAGGAG CTGCAGGACGGGGCCGAGAGCAATGGGGGTGGCGGCGGCGGCGGAGCCGGCAGCGGCGGCGGGCCCGGCG CGGAGCCGGACCTGAAGAACTCGAACGGGAACGCGGGCCCTAGGCCCGCCCTGAACAATAACCTCCCGGA GCCGCCCGGCGGCGGCGGCGGCGGCGGCAGCAGCAGCAGCGACGGGGTGGGGGCGCCTCCTCACTCGGCC GCGGCCGCCCTGCCGCCCCCAGCCTACGGCTTCGGGCAAGCCTACGGCCGGAGCCCGTCTGCCGTCGCCG CCGCGGCGGCCGCCGTCTTCCACCAACAACATGGCGGACAACAAAGCCCTGGCCTGGCAGCGCTGCAGAG CGGCGGCGGCGGGGGCTTGGAGCCCTACGCCGGGCCCCAGCAGAACTCGCACGACCACGGCTTCCCCAAC CACCAGTACAACTCCTACTACCCCAACCGCAGCGCCTACCCCCCGCCTCCCCAGGCCTACGCGCTGAGCT CCCCGAGAGGTGGCACTCCGGGCTCCGGCGCGGCGGCGGCCGCCGGCTCCAAGCCGCCTCCCTCCTCCAG CGCCTCTGCCTCCTCGTCGTCTTCGTCCTTCGCACAGCAGCGCTTCGGGGCCATGGGGGGAGGCGGCCCC TCAGCGGCCGGCGGGGGAACTCCCCAGCCCACCGCCACCCCCACCCTCAACCAACTGCTCACGTCGCCCA GCTCGGCCCGTGGCTACCAGGGCTACCCCGGGGGCGACTACGGCGGCGGGCCCCAGGACGGGGGCGCGGG CAAAGGCCCGGCGGACATGGCCTCGCAGTGCTGGGGGGCTGCGGCGGCGGCGGCGGCGGCGGCAGCGGCC GTCTCGGGAGGGGCCCAACAAAGGAGCCACCACGCGCCCATGAGCCCCGGGAGCAGCGGCGGCGGGGGGC AGCCGCTCGCCCGGACCCCTCAGTCATCCAGTCCAATGGATCAGATGGGAAAGATGAGACCTCAGCCGTA TGGTGGGACTAACCCATACTCGCAACAACAGGGACCTCCTTCAGGACCGCAACAAGGACATGGGTACCCA GGGCAGCCATATGGGTCCCAGACTCCACAGCGGTACCCCATGACCATGCAGGGCCGGGCTCAGAGTGCCA TGGGCAGCCTCTCTTATGCACAGCAGATTCCACCTTATGGCCAGCAAGGCCCCAGTGCGTATGGCCAGCA GGGCCAGACTCCATACTATAACCAGCAAAGTCCTCATCCCCAGCAGCAGCCACCTTACGCCCAGCAACCA CCATCCCAGACCCCTCATGCCCAGCCTTCGTATCAGCAGCAGCCGCAGACTCAGCAACCACAGCTTCAGT CCTCTCAGCCTCCATATTCCCAGCAGCCATCCCAGCCTCCACATCAGCAGTCCCCAACTCCATATCCCTC CCAGCAGTCCACCACACAACAGCATCCCCAGAGCCAGCCCCCCTACTCACAACCACAGGCACAGTCTCCC TACCAGCAGCAGCAACCTCAGCAGCCAGCATCCTCGTCGCTCTCCCAGCAGGCTGCATATCCTCAGCCCC AGCCTCAGCAGTCCCAGCAAACTGCCTATTCCCAGCAGCGCTTCCCTCCACCACAGGAGCTTTCTCAAGA TTCATTTGGGTCTCAGGCATCCTCAGCCCCCTCAATGACCTCCAGTAAGGGAGGGCAAGAAGATATGAAC CTGAGTCTTCAGTCAAGGCCCTCCAGCTTGCCTGATCTGTCTGGTTCAATCGATGATCTCCCCATGGGGA CAGAAGGAGCTCTGAGTCCTGGCGTGAGCACATCAGGGATTTCCAGCAGCCAAGGAGAGCAGAGCAATCC AGCTCAGTCTCCCTTTTCTCCTCACACCTCCCCTCACCTGCCTGGCATCCGAGGCCCGTCCCCGTCCCCT GTTGGCTCTCCTGCCAGTGTCGCGCAGTCTCGCTCAGGACCACTCTCGCCTGCTGCAGTGCCAGGCAACC AGATGCCACCTCGGCCACCCAGTGGCCAGTCAGACAGCATCATGCACCCTTCCATGAACCAATCAAGCAT TGCCCAAGATCGAGGTTATATGCAGAGGAACCCCCAGATGCCCCAGTACACTTCCCCTCAGCCTGGCTCG GCCTTATCCCCACGTCAGCCGTCTGGAGGACAGATGCACTCGGGCGTGGGCTCCTACCAGCAGAACTCCA TGGGGAGCTACGGCCCCCAGGGCAGTCAGTATGGCCCACAAGGAGGCTATCCTAGGCAGCCTAACTATAA TGCCTTGCCCAACGCCAACTACCCCAATGCAGGCATGGCCGGAAGTATGAACCCTATGGGTGCTGGAGGT CAGATGCATGGGCAGCCTGGAATCCCACCTTACGGCACACTCCCTCCAGGGAGAATGGCTCATGCGTCTA TGGGCAACAGGCCCTATGGCCCTAATATGGCCAATATGCCACCTCAGGTTGGGTCAGGGATGTGTCCTCC ACCAGGGGGAATGAACAGGAAAACTCAAGAGTCTGCTGTTGCCATGCATGTTGCTGCCAACTCTATCCAA AACAGGCCACCAGGCTACCCAAATATGAATCAAGGGGGCATGATGGGAACTGGACCTCCCTATGGACAGG GGATCAATAGTATGGCTGGCATGATCAACCCTCAGGGACCCCCATATCCTATGGGTGGAACCATGGCCAA CAATTCAGCAGGGATGGCAGCCAGCCCAGAGATGATGGGCCTTGGGGATGTTAAGTTAACTCCCGCCACA AAAATGAACAACAAGGCAGATGGAACACCCAAGACAGAATCCAAATCTAAGAAATCCAGTTCTTCTACCA CCACCAATGAGAAGATCACCAAATTGTATGAGTTGGGTGGTGAGCCCGAGAGGAAGATGTGGGTGGACCG GTACCTGGCCTTCACAGAGGAGAAGGCCATGGGCATGACAAATCTGCCTGCTGTGGGGAGGAAGCCTCTG GACCTCTATCGCCTCTATGTGTCTGTGAAGGAGATTGGTGGGTTGACTCAGGTCAACAAGAACAAAAAAT GGCGGGAACTTGCAACCAACCTCAATGTGGGTACATCAAGCAGTGCTGCCAGCTCACTGAAAAAGCAGTA TATCCAATGTCTCTATGCCTTTGAGTGCAAGATCGAGCGTGGAGAAGACCCTCCCCCCGATATCTTCGCA GCTGCTGACTCCAAGAAGTCCCAACCCAAGATCCAGCCCCCCTCTCCTGCGGGATCAGGGTCTATGCAGG GGCCACAAACTCCTCAGTCAACCAGCAGTTCTATGGCAGAAGGAGGAGACCTGAAGCCACCAACTCCAGC ATCCACACCACATAGTCAAATTCCCCCCTTACCAGGCATGAGCAGGAGCAACTCAGTCGGAATCCAGGAT GCCTTTCCTGATGGAAGTGACCCCACATTCCAGAAGCGGAATTCCATGACTCCAAACCCTGGGTACCAGC CCAGTATGAATACCTCTGACATGATGGGGCGCATGTCCTATGAGCCAAATAAGGATCCTTATGGCAGCAT GAGGAAAGCGCCAGGAAGTGATCCCTTCATGTCCTCAGGGCAGGGCCCCAATGGCGGGATGGGTGATCCC TACAGCCGTGCTGCTGGCCCTGGGCTGGGAAGTGTGGCGATGGGACCACGGCAGCACTATCCCTATGGAG GTCCTTACGACAGAGTGAGGACGGAGCCTGGAATCGGGCCTGAAGGAAATATGGGCACTGGAGCCCCTCA GCCAAATCTCATGCCTTCCACCCCAGATTCGGGGATGTATTCTCCTAGCCGCTACCCCCCGCAGCAGCAG CAGCAACAGCAGCAACAACATGATTCCTATGGCAATCAATTCTCTACCCAAGGCACCCCTTCCAGCAGCC CCTTCCCCAGCCAGCAGACCACAATGTATCAGCAGCAGCAGCAGAATTATAAGAGGCCAATGGATGGCAC ATATGGCCCCCCTGCCAAGCGGCATGAAGGGGAGATGTACAGTGTGCCGTACAGCGCTGGGCAAGGCCAG CCTCAACAGCAGCAGTTGCCTGCAGCTCAGTCCCAGCCTGCCAGCCAGCCACAAGCTGCCCAGCCTTCCC CTCAGCAGGACGTGTACAACCAGTACAGCAATGCCTACCCTGCCTCCGCCACCGCTGCTACTGATCGCCG ACCAGCAGGCGGCCCCCAGAACCAATTTCCATTCCAGTTTGGCCGAGACCGAGTCTCTGCACCTCCTGGT TCCAGTGCCCAGCAGAACATGCCACCACAAATGATGGGTGGCCCCATACAGGCATCAGCTGAGGTTGCTC AGCAGGGCACCATGTGGCAGGGGCGAAATGACATGACCTACAATTATGCCAACAGGCAGAACACAGGCTC TGCCACCCAGGGCCCTGCGTATCATGGTGTGAACCGAACAGATGAAATGCTCCACACAGATCAGAGGGCC AACCATGAAGGCCCATGGCCTTCCCATGGCACACGCCAGCCTCCGTATGGTCCTTCAGCCCCTGTTCCCC CCATGACAAGGCCCCCTCCATCTAACTACCAGCCCCCACCAAGCATGCCGAATCACATTCCTCAGGTATC CAGCCCCGCTCCCCTCCCCCGGCCCATGGAGAACCGTACTTCTCCTAGCAAGTCTCCATTCCTGCACTCT GGGATGAAAATGCAAAAGGCGGGTCCACCGGTGCCTGCTTCGCACATAGCGCCTACCCCTGTGCAGCCGC CTATGATTCGGCGGGATATCACCTTCCCACCTGGCTCTGTAGAGGCCACTCAGCCTGTGTTGAAGCAGAG AAGGCGGCTCACAATGAAAGACATTGGAACCCCGGAGGCATGGCGGGTAATGATGTCCCTCAAGTCCGGG CTCCTGGCAGAGAGCACGTGGGCGTTAGACACCATTAACATTCTACTGTATGATGACAACAGCATTATGA CCTTCAACCTCAGCCAGCTCCCAGGCTTGCTAGAGCTCCTTGTGGAATATTTCCGTAGATGCCTAATTGA AATCTTTGGCATTTTAAAGGAGTATGAGGTAGGGGACCCAGGACAGAGAACATTACTAGACCCTGGGAGA TTCACCAAGGTGTATAGTCCAGCCCATACAGAGGAAGAAGAGGAAGAACACCTTGATCCTAAACTGGAGG AGGAAGAGGAAGAAGGGGTTGGAAATGATGAGGAGATGGCCTTTTTGGGCAAGGACAAGCCATCTTCAGA GAATAATGAGGAGAAGCTAGTCAGTAAGTTTGACAAGCTTCCGGTAAAGATCGTGCAGAGGAATGACCCA TTTGTGGTGGACTGCTCAGATAAGCTTGGGCGCGTGCAGGAGTTTGACAGTGGCCTGCTACACTGGCGGA TTGGTGGTGGGGATACCACTGAGCATATCCAGACCCACTTTGAGAGCAAGATAGAGCTGCTGCCTTCCCG GCCTTATGTGCCCTGCCCAACGCCCCCTCGGAAACACCTCACAACAGTAGAGGGCACACCAGGGACAACG GAGCAGGAGGGCCCCCCGCCCGATGGCCTTCCAGAGAAAAGGATCACAGCCACCATGGATGACATGTTGT CTACCCGGTCTAGCACATTGACTGATGAGGGGGCAAAGAGTGCAGAGGCCACCAAGGAAAGCAGCAAGTT TCCATTTGGCATTAGCCCAGCACAGAGCCACCGGAACATCAAAATTTTAGAGGATGAACCCCATAGTAAG GATGAGACCCCACTGTGTACCCTTCTGGACTGGCAGGATTCCCTTGCTAAGCGCTGTGTCTGTGTCTCCA ATACCATCCGGAGCCTGTCGTTTGTGCCAGGCAACGACTTTGAGATGTCCAAACACCCAGGGCTGCTGCT TATCCTGGGCAAGCTGATCCTGCTGCACCACAAGCACCCAGAGCGGAAGCAGGCACCACTAACTTATGAG AAGGAGGAGGAACAGGACCAAGGGGTGAGCTGTGACAAAGTGGAGTGGTGGTGGGACTGCTTGGAGATGC TCCGAGAAAACACGCTGGTCACCCTCGCCAACATCTCGGGGCAATTGGACCTATCCCCATATCCTGAGAG CATCTGCCTGCCTGTCCTGGACGGACTCCTACACTGGGCAGTTTGCCCTTCAGCTGAAGCCCAGGACCCC TTCTCAACCCTAGGCCCCAATGCCGTCCTCTCCCCCCAGAGATTGGTCTTGGAAACCCTCAGCAAACTCA GCATCCAGGACAACAATGTGGACCTGATCCTGGCCACTCCCCCTTTTAGCCGCCTGGAGAAGTTGTATAG TACCATGGTGCGCTTCCTCAGTGACCGAAAGAACCCAGTGTGCCGGGAGATGGCCGTGGTACTGCTGGCA AATCTGGCCCAGGGGGACAGCCTGGCAGCCCGGGCCATTGCAGTGCAGAAGGGCAGCATCGGCAACCTCC TGGGTTTCCTGGAGGACAGCCTTGCTGCCACACAGTTCCAGCAGAGCCAGGCAAGCCTCCTGCATATGCA GAATCCACCCTTTGAACCAACTAGTGTGGACATGATGCGGCGGGCTGCCCGAGCACTGCTTGCCCTGGCC AAGGTGGATGAGAACCACTCAGAGTTCACTCTGTATGAGTCACGGCTGTTGGACATCTCCGTGTCACCAC TGATGAACTCATTGGTTTCACAAGTCATTTGTGATGTACTGTTTTTGATTGGCCAGTCATGA
Translation (2283 aa): MAAQVAPAAASSLGNPPPPPSELKKAEQQQREEAGGEAAAAAAERGEMKAAAGQESEGPAVGPPQPLGKE LQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGPRPALNNNLPEPPGGGGGGGSSSSDGVGAPPHSA AAALPPPAYGFGQAYGRSPSAVAAAAAAVFHQQHGGQQSPGLAALQSGGGGGLEPYAGPQQNSHDHGFPN HQYNSYYPNRSAYPPPPQAYALSSPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGP SAAGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYGGGPQDGGAGKGPADMASQCWGAAAAAAAAAAA VSGGAQQRSHHAPMSPGSSGGGGQPLARTPQSSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGYP GQPYGSQTPQRYPMTMQGRAQSAMGSLSYAQQIPPYGQQGPSAYGQQGQTPYYNQQSPHPQQQPPYAQQP PSQTPHAQPSYQQQPQTQQPQLQSSQPPYSQQPSQPPHQQSPTPYPSQQSTTQQHPQSQPPYSQPQAQSP YQQQQPQQPASSSLSQQAAYPQPQPQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTSSKGGQEDMN LSLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSP VGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQYTSPQPGS ALSPRQPSGGQMHSGVGSYQQNSMGSYGPQGSQYGPQGGYPRQPNYNALPNANYPNAGMAGSMNPMGAGG QMHGQPGIPPYGTLPPGRMAHASMGNRPYGPNMANMPPQVGSGMCPPPGGMNRKTQESAVAMHVAANSIQ NRPPGYPNMNQGGMMGTGPPYGQGINSMAGMINPQGPPYPMGGTMANNSAGMAASPEMMGLGDVKLTPAT KMNNKADGTPKTESKSKKSSSSTTTNEKITKLYELGGEPERKMWVDRYLAFTEEKAMGMTNLPAVGRKPL DLYRLYVSVKEIGGLTQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFA AADSKKSQPKIQPPSPAGSGSMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMSRSNSVGIQD AFPDGSDPTFQKRNSMTPNPGYQPSMNTSDMMGRMSYEPNKDPYGSMRKAPGSDPFMSSGQGPNGGMGDP YSRAAGPGLGSVAMGPRQHYPYGGPYDRVRTEPGIGPEGNMGTGAPQPNLMPSTPDSGMYSPSRYPPQQQ QQQQQQHDSYGNQFSTQGTPSSSPFPSQQTTMYQQQQQNYKRPMDGTYGPPAKRHEGEMYSVPYSAGQGQ PQQQQLPAAQSQPASQPQAAQPSPQQDVYNQYSNAYPASATAATDRRPAGGPQNQFPFQFGRDRVSAPPG SSAQQNMPPQMMGGPIQASAEVAQQGTMWQGRNDMTYNYANRQNTGSATQGPAYHGVNRTDEMLHTDQRA NHEGPWPSHGTRQPPYGPSAPVPPMTRPPPSNYQPPPSMPNHIPQVSSPAPLPRPMENRTSPSKSPFLHS GMKMQKAGPPVPASHIAPTPVQPPMIRRDITFPPGSVEATQPVLKQRRRLTMKDIGTPEAWRVMMSLKSG LLAESTWALDTINILLYDDNSIMTFNLSQLPGLLELLVEYFRRCLIEIFGILKEYEVGDPGQRTLLDPGR FTKVYSPAHTEEEEEEHLDPKLEEEEEEGVGNDEEMAFLGKDKPSSENNEEKLVSKFDKLPVKIVQRNDP FVVDCSDKLGRVQEFDSGLLHWRIGGGDTTEHIQTHFESKIELLPSRPYVPCPTPPRKHLTTVEGTPGTT EQEGPPPDGLPEKRITATMDDMLSTRSSTLTDEGAKSAEATKESSKFPFGISPAQSHRNIKILEDEPHSK DETPLCTLLDWQDSLAKRCVCVSNTIRSLSFVPGNDFEMSKHPGLLLILGKLILLHHKHPERKQAPLTYE KEEEQDQGVSCDKVEWWWDCLEMLRENTLVTLANISGQLDLSPYPESICLPVLDGLLHWAVCPSAEAQDP FSTLGPNAVLSPQRLVLETLSKLSIQDNNVDLILATPPFSRLEKLYSTMVRFLSDRKNPVCREMAVVLLA NLAQGDSLAARAIAVQKGSIGNLLGFLEDSLAATQFQQSQASLLHMQNPPFEPTSVDMMRRAARALLALA KVDENHSEFTLYESRLLDISVSPLMNSLVSQVICDVLFLIGQS
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