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Report for CCDS48574.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48574.1 Public Mus musculus 10 Npffr1 23 108 98 CCDS HistoryNCBI Gene:237362Re-query CCDS DB by CCDS ID:48574.1Re-query CCDS DB by GeneID:237362See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48574.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020287.7 ENSMUSP00000020287.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020287.7Link to Ensembl Protein Viewer:ENSMUSP00000020287.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000020287Re-query CCDS DB by Protein ID:ENSMUSP00000020287
Original member Current member NCBI NM_001177511.2 NP_001170982.1 Accepted alive Link to Nucleotide Sequence:NM_001177511.2Link to Protein Sequence:NP_001170982.1Re-query CCDS DB by Nucleotide ID:NM_001177511Re-query CCDS DB by Protein ID:NP_001170982Link to BLAST:NP_001170982.1

Chromosomal Locations for CCDS 48574.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 61595492 61595498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61613956 61614270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61623292 61623391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61625509 61626385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGGAGGCGGAACCCTCCCAGCCTCCCAACGGCAGCTGGCCCCCGAGTCTGAACGAGAGTGATGCTGAAA
CCGCCCCGGTGGCCAGCCTCACCTTCTCTTCCTACTACCAGCACTCCTCTCCGGTGGCCGCCATGTTCAT
CGCCGCCTACGCGCTCATCTTCCTCCTCTGCATGGTGGGCAACACCCTGGTCTGCTTCATCGTGCTTAAG
AACCGGCACATGCGCACTGTCACCAACATGTTCATCCTCAACCTGGCCGTCAGCGACCTGCTGGTGGGCA
TCTTCTGCATGCCCACAACCCTCGTGGACAACCTTATCACCGGTTGGCCTTTTGACAATGCCACATGCAA
GATGAGCGGCTTGGTACAGGGCATGTCCGTGTCTGCGTCGGTTTTCACACTGGTGGCCATTGCCGTGGAG
AGGTTCCGCTGCATCGTACACCCTTTCCGTGAGAAGCTGACCCTCCGGAAGGCGCTGCTCACCATAGCGG
TGATCTGGGCGCTGGCGCTGCTCATCATGTGTCCCTCGGCGGTCACTCTGACCGTCACGCGAGAGGAGCA
TCACTTCATGCTGGATGCTCGCAACCGCTCCTACCCTCTCTACTCGTGCTGGGAGGCCTGGCCCGAGAAG
GGCATGCGCAAGGTCTACACCGCCGTGCTCTTCGCGCACATCTATCTGGCGCCGCTGGCGCTCATCGTGG
TGATGTACGCGCGCATCGCGCGCAAGCTGTGCCAGGCCCCCGGTCCAGCGCGCGACGCGGAGGAGGCGGT
GGCCGAGGGTGGCCGCGCGTCGCGCCGCAGGGCCCGCGTGGTGCATATGCTGGTCATGGTGGCGCTCTTC
TTCACCTTGTCCTGGCTGCCACTCTGGGTGCTGCTGCTGCTCATCGACTACGGGGAGCTGAGCGAGCTGC
AGCTGCACTTGCTGTCCGTCTACGCCTTCCCGTTGGCACACTGGCTGGCCTTCTTCCACAGCAGCGCCAA
CCCCATTATCTACGGCTACTTCAACGAGAACTTCCGCCGCGGCTTCCAGGCTGCCTTCCGGGCACAGCTC
TGCTGGCTTCCCTGGGCCGCCCACAAGCAAGCCTACTCCGAGCGGCCTGGCCGCCTCCTGCGCAGGCGGG
TGGTGGTGGACGTGCAACCCAGCGACTCAGGGCTGCCATCGGAGTCTGGCCCCAGCAGTGGGGTCCCAGG
GCCTAACCGGCTGCCATTGCGCAATGGGCGTGTGGCCCACCAGGATGGCCCGAGGGAAGGGCCTGGCTGC
AACCACATGCCCCTCACTATCCCAGCCTGGAACATTTGA

Translation (432 aa):
MEAEPSQPPNGSWPPSLNESDAETAPVASLTFSSYYQHSSPVAAMFIAAYALIFLLCMVGNTLVCFIVLK
NRHMRTVTNMFILNLAVSDLLVGIFCMPTTLVDNLITGWPFDNATCKMSGLVQGMSVSASVFTLVAIAVE
RFRCIVHPFREKLTLRKALLTIAVIWALALLIMCPSAVTLTVTREEHHFMLDARNRSYPLYSCWEAWPEK
GMRKVYTAVLFAHIYLAPLALIVVMYARIARKLCQAPGPARDAEEAVAEGGRASRRRARVVHMLVMVALF
FTLSWLPLWVLLLLIDYGELSELQLHLLSVYAFPLAHWLAFFHSSANPIIYGYFNENFRRGFQAAFRAQL
CWLPWAAHKQAYSERPGRLLRRRVVVDVQPSDSGLPSESGPSSGVPGPNRLPLRNGRVAHQDGPREGPGC
NHMPLTIPAWNI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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