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Report for CCDS35520.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35520.1 Public Mus musculus 1 Defb18 23 108 98 CCDS HistoryNCBI Gene:654460Re-query CCDS DB by CCDS ID:35520.1Re-query CCDS DB by GeneID:654460See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35520.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097818.1 ENSMUSP00000095427.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097818.1Link to Ensembl Protein Viewer:ENSMUSP00000095427.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000097818Re-query CCDS DB by Protein ID:ENSMUSP00000095427
Original member Current member NCBI NM_001039123.2 NP_001034212.1 Accepted alive Link to Nucleotide Sequence:NM_001039123.2Link to Protein Sequence:NP_001034212.1Re-query CCDS DB by Nucleotide ID:NM_001039123Re-query CCDS DB by Protein ID:NP_001034212Link to BLAST:NP_001034212.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034212.1 85 Q30KP5 85 100% 0 0

Chromosomal Locations for CCDS 35520.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 18236473 18236660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 18237374 18237443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (258 nt):
ATGCAATCAACAATGAAGATGTTTGGCATCATCCTGATGGTTATCTTCTCTGTGTCCTGTGGTCCTTCTG
CTCCTCAGATGAAAACAAGAGAGGTTGCAGAAAGAACACACAAATGTTCCCTGGTCCGTGGTACATGCAA
GTCTGAATGTAACAGTTGGGAGTATAAATATAACTACTGTCACACTGAGCCCTGCTGTGTGGTGCGAGAA
TACAAAAGAATGGAGAAATTATTGAGTACTCCCAAATATACAACTTAA

Translation (85 aa):
MQSTMKMFGIILMVIFSVSCGPSAPQMKTREVAERTHKCSLVRGTCKSECNSWEYKYNYCHTEPCCVVRE
YKRMEKLLSTPKYTT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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