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Report for CCDS24398.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24398.1 Public Mus musculus 11 Emid1 23 108 98 CCDS HistoryNCBI Gene:140703Re-query CCDS DB by CCDS ID:24398.1Re-query CCDS DB by GeneID:140703See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24398.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062821.12 ENSMUSP00000061704.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062821.12Link to Ensembl Protein Viewer:ENSMUSP00000061704.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000062821Re-query CCDS DB by Protein ID:ENSMUSP00000061704
Original member Current member NCBI NM_080595.3 NP_542162.1 Accepted alive Link to Nucleotide Sequence:NM_080595.3Link to Protein Sequence:NP_542162.1Re-query CCDS DB by Nucleotide ID:NM_080595Re-query CCDS DB by Protein ID:NP_542162Link to BLAST:NP_542162.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542162.1 444 Q91VF5-1 444 100% 0 0

Chromosomal Locations for CCDS 24398.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 5106842 5106969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5110690 5110774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5116880 5116924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5128870 5128914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5129009 5129071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5129428 5129480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5129622 5129720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5130632 5130778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5131482 5131571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5131920 5132040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5134349 5134410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5135354 5135431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5143827 5143930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5144295 5144408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5152122 5152222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1335 nt):
ATGGGCGGCCCGCGGGCCTGGACGCTGCTCTGCCTCGGGCTCCTGCTCCCGGGAGGCGGCGCCGCGTGGA
GCGTCCCGGGCGCCCGGTTCTCGGGTCGCAGGAACTGGTGCTCCTACGTGGTGACCCGGACTGTCTCCTG
CCACGTGCAAAATGGTACCTACCTCCAGCGAGTGCTACAGAACTGCCCGTGGCCCATGGGCTGCCCTGGG
AACAGCTACAGAACCGTGGTGAGACCCTTGTACAAAGTGACGTACAAGACAGTGACGGCCCGAGAATGGA
GGTGCTGCCCTGGACATTCAGGGGTGACCTGTGAGGAAGGCTCCCCTGGCCTCCTGGAGCCCACGTGGAC
GGACAGCGGCATGCGGCGGATGGCAGTGAGGCCCACAGCCCTCTCAGGTTGTCTCAACTGCAGCAAAGTG
TCTGAGCTGACAGAGAGGCTGAAGGCGCTGGAGGCCAAGGTGGCGGTGCTGAGTGTGACAGAGCAGACAG
TGCCCTCAGTCCCAGCCACCCCTGAGGACTCTGCCCTGCTCTGGGGCTCCCCGGCTGCCCGGGGCAGCCC
TGGAGATGGAAGCCTGCAGGATAGACTTGATTCTTGGGGGCTTCCTGGGCCCACAGGCCCCAAGGGAGGC
ACCGACAGCCAGAGCCCAGTGAGGATTAGAGGCCCGCCAGGCCCACAGGGACCCCCAGGACGCCCTGGCC
AAACAGGAGCTGCAGGCACCCCTGGAAAGATGGGACCTCCAGGGCCTCCAGGTCCACCTGGACCCCCAGG
GCCTCCAGCCCCTGTAGGGCCACCCTATGGCCAGGTCTCTCTGCATGGGGATCCACTGCTGTCTAATACC
TTCACTGAGATGGGCAGCCACTGGCCCCAAGGACCCACTGGGCCCCCAGGTCCTCCAGGCCCCCCAGGGC
CCATGGGTCCTCCTGGACTTCCTGGCCCCATGGGTGCCCCTGGGAGTCCTGGACACATGGGAATCCCAGG
CCCTTCTGGACCCAAAGGAACCTCTGGCCACCCAGGAGAGAAGGGAGAGAGAGGACTGCCTGGGGAACCT
GGCCCCCAGGGTTTGATGGGGGTTCCGGGAGAACCTGGCCCCAAAGGAGACCCTGGTGAGAAGAGCCACT
GGGGGGAGGGGTTGCACCAACTACGCGAGGCTTTGAAGATTTTAGCTGAGAGGGTTTTAATCTTGGAAAC
AATGATTGGGCTCTATGAACCAGACTTGGGATCCGGGGCAGGCCCTGATGGCACAGGTACCCCCAGCCTC
CTTCGAGGCAAGAGGGGAGGACACCCAACCAACTACCCGATCATCACCCCCAGGAGACGCAGCGAGAGGA
GCTGA

Translation (444 aa):
MGGPRAWTLLCLGLLLPGGGAAWSVPGARFSGRRNWCSYVVTRTVSCHVQNGTYLQRVLQNCPWPMGCPG
NSYRTVVRPLYKVTYKTVTAREWRCCPGHSGVTCEEGSPGLLEPTWTDSGMRRMAVRPTALSGCLNCSKV
SELTERLKALEAKVAVLSVTEQTVPSVPATPEDSALLWGSPAARGSPGDGSLQDRLDSWGLPGPTGPKGG
TDSQSPVRIRGPPGPQGPPGRPGQTGAAGTPGKMGPPGPPGPPGPPGPPAPVGPPYGQVSLHGDPLLSNT
FTEMGSHWPQGPTGPPGPPGPPGPMGPPGLPGPMGAPGSPGHMGIPGPSGPKGTSGHPGEKGERGLPGEP
GPQGLMGVPGEPGPKGDPGEKSHWGEGLHQLREALKILAERVLILETMIGLYEPDLGSGAGPDGTGTPSL
LRGKRGGHPTNYPIITPRRRSERS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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