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Report for CCDS40225.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40225.2 Public Mus musculus 8 Mcf2l 23 108 98 CCDS HistoryNCBI Gene:17207Re-query CCDS DB by CCDS ID:40225.2Re-query CCDS DB by GeneID:17207See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 40225.2
The coding region has been updated to extend the N-terminus to one that is supported by available conservation data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 40225.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110876.8 ENSMUSP00000106500.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110876.8Link to Ensembl Protein Viewer:ENSMUSP00000106500.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110876Re-query CCDS DB by Protein ID:ENSMUSP00000106500
Original member Current member NCBI NM_178076.4 NP_835177.2 Accepted alive Link to Nucleotide Sequence:NM_178076.4Link to Protein Sequence:NP_835177.2Re-query CCDS DB by Nucleotide ID:NM_178076Re-query CCDS DB by Protein ID:NP_835177Link to BLAST:NP_835177.2

Chromosomal Locations for CCDS 40225.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 12915976 12916054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12963164 12963247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12972979 12973093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12984860 12984950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12993829 12993948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12996610 12996726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12997246 12997395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12998369 12998493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12999949 13000063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13000743 13000862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13001282 13001473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13001811 13002002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13002638 13002797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13003575 13003648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13003885 13003961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13005450 13005516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13006725 13006840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13007685 13007754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13009467 13009559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13009654 13009746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13010416 13010541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13011379 13011600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13011729 13011821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13012801 13012879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13012998 13013064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13013535 13013650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13013915 13014007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13014819 13014893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13017347 13017468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13018061 13018173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13018696 13018867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3528 nt):
ATGAGGTTTTGGCTGAGAAATGAAGAGATGGCCCTAGAAGAAATGGTGCAGAGATTAAACGCGGTTTCCA
AGAACACTGATGAAATCATGCACCAGGACATCGTCCCGCTCTGTGCCGCTGACATCCAGGAGCAGCTGAA
GAAGCGCTTTGCTTACCTGTCTGGTGGGCGGGGACAGGACGGAAGCCCAGTCATCACCTTCCCTGACTAC
CCAGCCTTCAGCGAGATCCCGGACAAGGAGTTCCAGAATGTCATGACCTATCTCACCAGCATCCCCAGTT
TGCAAGATGCTGGCATTGGATTCATCTTGGTCATAGACCGAAGGCAGGACAAATGGACCTCTGTGAAGGC
ATCCGTCCTGCGGATAGCCGCATCTTTCCCAGCCAACCTGCAGCTTGTCCTTGTTCTTCGGCCCACGGGC
TTTTTCCAGAGGACTCTCTCGGACATTGCCTTCAAGTTCAACAGAGATGAGTTTAAGATGAAAGTGCCGG
TCATGATGCTAAGCTCAGTGCCAGAACTACACGGCTACATTGATAAGTCGCAGCTGACCGAGGACCTCGG
GGGGACCCTGGACTACTGCCACTCCAGGTGGCTGTGCCACCGCACAGCAATTGAAAGCTTCGCCCTGATG
GTGAAGCAGACAGCCCAGATGCTGCAGGCCTTTGGGACCGAGCTGGCTGAAACAGAGCTGCCGAATGACG
TCCAGTCAACCAGCCTGGTGCTCAGCGCACACACAGAGAAGAAGGCCAAAGTGAAGGAAGATCTGCAGTT
AGCACTGAAGGAGGGGAACAGCATCCTGGAGAGCCTCAGAGAGCCACTGGCTGAGAGCGCGGCCCACAGT
GTGAACCAGGACCAGCTGGACAATCAGGCCACCGTGCAGAGGCTCCTGGCCCAGCTGAATGAGACGGAGG
CTGCCTTTGACGAATTCTGGGCAAAGCATCAGCAGAAGCTGGAACAGTGCCTGCAGCTGCGGCATTTTGA
GCAAGGTTTCCGGGAGGTCAAAACCACCTTGGATTCCATGTCCCAGAAGATAGCTGCTTTCACGGATGTT
GGCAACAGCCTGGCCCACGTGCAGCACCTTCTGAAGGACTTGACCGCCTTTGAGGAGAAGTCCAGTGTGG
CTGTGGACAAGGCCCGCGCCCTGTCACTGGAAGGTCAGCAGCTGATTGAGAACAGGCACTACGCTGTGGA
CTCCATCCACCCCAAGTGTGAAGAGCTCCAGCACCTCTGTGACCACTTCGCCTCTGAGGTCACCAGGAGG
CGGGGCCTGCTCAGCAAGTCCTTGGAGCTGCATAGCCTCCTGGAGACGTCCATGAAGTGGAGCGACGAGG
GGATCTTCCTGCTGGCCTCGCAGCCTGTGGACAAATGCCAGTCCCAGGATGGCGCAGAGGCGGCCCTCCA
GGAGATTGAGAAGTTTCTGGAGACCGGTGCAGAAAATAAGATTCAGGAGCTCAATGAGATTTACAAGGAA
TACGAATGCATCCTCAACCAGGACCTTCTGGAACACGTGCAAAAAGTCTTTCAGAAGCAAGAAAGCACGG
AGGAGATGTTCCACCGCAGGCAAGCCAGCCTGAAGAAACTGGCAGCCAAGCAGACACGGCCTGTGCAGCC
CGTGGCCCCCCGACCAGAGGCGCTTACCAAGTCGCCCTCCCCCTCGCCAGGCTCCTGGCGAAGCTCTGAG
AACTCCAGCTCTGAGGGCAACGCACTCCGCAGAGGGCCCTACAGGAGAGCCAAGAGCGAAATGAGTGAAC
CCCGGCAGGGCCGCACCAGCTCCACAGGGGAAGAGGAAGAGAGCCTGGCCATCCTGCGCAGACACGTGAT
GAATGAGCTTCTGGACACCGAGCGGGCCTACGTGGAGGAGCTGCTCTGTGTCTTAGAGGGCTATGCCGCA
GAGATGGATAACCCCTTGATGGCACACCTCATCTCAACAGGCCTGCAAAACAAGAAGAACATTCTGTTTG
GAAACATGGAGGAAATCTATCATTTTCACAACAGAATATTCCTGCGGGAGCTGGAGAGCTGCATAGACTG
CCCAGAGCTGGTGGGGAGGTGCTTTCTGGAAAGGATGGAGGAGTTCCAGATCTATGAGAAGTACTGTCAG
AACAAGCCACGCTCTGAGAGCCTGTGGAGGCAGTGCTCTGACTGCCCCTTCTTCCAGGAGTGTCAGAAGA
AGCTGGACCACAAGCTGAGCCTGGACTCCTACCTGCTGAAACCTGTGCAGAGGATAACCAAGTACCAGCT
GCTGCTCAAGGAAATGCTGAAGTACAGCAAGCACTGTGAAGGGGCAGAGGACCTGCAGGAGGCGCTGAGC
TCCATCCTGGGCATCCTCAAGGCTGTGAACGACTCCATGCATCTCATCGCCATCACTGGCTATGATGGAA
ACCTTGGCGACCTGGGGAAGCTGCTGATGCAAGGTTCCTTCAGCGTGTGGACAGACCACAAGAAGGGCCA
CACCAAAGTGAAGGAGCTAGCCAGGTTCAAGCCCATGCAGCGGCACCTGTTTCTGCACGAGAAGGCCGTC
CTCTTCTGCAAGAAGAGGGAGGAGAATGGGGAGGGATACGAGAAGGCTCCTTCCTACAGCTACAAGCAGT
CCTTGAATATGACGGCTGTCGGCATCACAGAGAACGTGAAGGGTGACACCAAGAAGTTCGAGATCTGGTA
CAACGCAAGGGAGGAGGTTTATATCATTCAGGCGCCAACCCCCGAGATTAAAGCAGCGTGGGTGAATGAG
ATTCGGAAGGTGCTGACCAGCCAGCTGCAGGCTTGCCGGGAGGCCAGCCAGCACCGAGCCCTGGAGCAGT
CCCACAGCCTTCCTTTGCCCACGCCATCCAGCACCAGTCCCACAAAAGGGAACACAAGAAATGTCAAGAA
GCTCGAAGACCGGAAGACGGACCCGCTCAGCCTGGAAGGCTACGTGAGCTCATCGTTACCAAAGCCCCCT
GAGAAGGGCAAAGACGATGCGGTCCCTAGTTCTACCTCTGAAAGCTCTGCGCTTTCCAGAAAGCGCTTCA
CGCTGCAGGGCTTGGCTAACCTCAAAGGTCAGAAAGCCTCTCCGACCAGTCCTGACAAAAAAGCTAAGCG
GCACGAAGTAAAGAGCGACCCGACTCCCTTTGGTTTGCGAGGCTGGAGCAAAACATCCCACTCCCTGGAG
GCCCCTGAGGAGGACGGAGGCTGGTCCAGTGCTGAGGAACTCATCAACTCATCTGATGCTGAGGAAGACG
GTGGAGTGGGCCCTAAGAAGCTGGTGCCGGGTAAATACACAGTGGTGATGGATGATGAGAAAGGGGGCCC
TGACACCCTTGCCATGAGGAGTGGAGATATGGTGGAGGTGGTGGAAGAAGGCGCTGAGGGCCTCTGGTAT
GTTCGGGACCTGACCAGCAGCAAGGAGGGATGGGTGCCAGCCAGCAGCCTATCCACCCTCCTGGGCAAAT
CCAGTTCAGCCCAGTGTCTGAGCAGCTCAGGTAAGATCCACTGTGCGCGCCAGCTGTGCCCTGAGCCTGC
CGAGATCCTCAGCCCAGAGCCCGTTTAA

Translation (1175 aa):
MRFWLRNEEMALEEMVQRLNAVSKNTDEIMHQDIVPLCAADIQEQLKKRFAYLSGGRGQDGSPVITFPDY
PAFSEIPDKEFQNVMTYLTSIPSLQDAGIGFILVIDRRQDKWTSVKASVLRIAASFPANLQLVLVLRPTG
FFQRTLSDIAFKFNRDEFKMKVPVMMLSSVPELHGYIDKSQLTEDLGGTLDYCHSRWLCHRTAIESFALM
VKQTAQMLQAFGTELAETELPNDVQSTSLVLSAHTEKKAKVKEDLQLALKEGNSILESLREPLAESAAHS
VNQDQLDNQATVQRLLAQLNETEAAFDEFWAKHQQKLEQCLQLRHFEQGFREVKTTLDSMSQKIAAFTDV
GNSLAHVQHLLKDLTAFEEKSSVAVDKARALSLEGQQLIENRHYAVDSIHPKCEELQHLCDHFASEVTRR
RGLLSKSLELHSLLETSMKWSDEGIFLLASQPVDKCQSQDGAEAALQEIEKFLETGAENKIQELNEIYKE
YECILNQDLLEHVQKVFQKQESTEEMFHRRQASLKKLAAKQTRPVQPVAPRPEALTKSPSPSPGSWRSSE
NSSSEGNALRRGPYRRAKSEMSEPRQGRTSSTGEEEESLAILRRHVMNELLDTERAYVEELLCVLEGYAA
EMDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNRIFLRELESCIDCPELVGRCFLERMEEFQIYEKYCQ
NKPRSESLWRQCSDCPFFQECQKKLDHKLSLDSYLLKPVQRITKYQLLLKEMLKYSKHCEGAEDLQEALS
SILGILKAVNDSMHLIAITGYDGNLGDLGKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAV
LFCKKREENGEGYEKAPSYSYKQSLNMTAVGITENVKGDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNE
IRKVLTSQLQACREASQHRALEQSHSLPLPTPSSTSPTKGNTRNVKKLEDRKTDPLSLEGYVSSSLPKPP
EKGKDDAVPSSTSESSALSRKRFTLQGLANLKGQKASPTSPDKKAKRHEVKSDPTPFGLRGWSKTSHSLE
APEEDGGWSSAEELINSSDAEEDGGVGPKKLVPGKYTVVMDDEKGGPDTLAMRSGDMVEVVEEGAEGLWY
VRDLTSSKEGWVPASSLSTLLGKSSSAQCLSSSGKIHCARQLCPEPAEILSPEPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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