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Report for CCDS11955.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11955.1 Public Homo sapiens 18 STARD6 24 110 108 CCDS HistoryNCBI Gene:147323Re-query CCDS DB by CCDS ID:11955.1Re-query CCDS DB by GeneID:147323See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11955.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000307844.4 ENSP00000310814.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000307844.4Link to Ensembl Protein Viewer:ENSP00000310814.3Re-query CCDS DB by Nucleotide ID:ENST00000307844Re-query CCDS DB by Protein ID:ENSP00000310814
Original member Current member EBI ENST00000581310.5 ENSP00000462349.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000581310.5Link to Ensembl Protein Viewer:ENSP00000462349.1Re-query CCDS DB by Nucleotide ID:ENST00000581310Re-query CCDS DB by Protein ID:ENSP00000462349
Original member Current member NCBI NM_139171.2 NP_631910.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_139171.2Link to Protein Sequence:NP_631910.1Re-query CCDS DB by Nucleotide ID:NM_139171Re-query CCDS DB by Protein ID:NP_631910Link to BLAST:NP_631910.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_631910.1 220 P59095 220 100% 0 0

Chromosomal Locations for CCDS 11955.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 54324692 54324875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54329347 54329440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54331742 54331859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54337125 54337251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54354054 54354103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54354484 54354573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (663 nt):
ATGGACTTCAAGGCAATTGCCCAACAAACTGCCCAAGAAGTTTTAGGTTATAATCGAGATACATCAGGCT
GGAAAGTGGTTAAAACTTCAAAAAAGATAACTGTTTCCAGTAAGGCTTCTAGAAAATTCCATGGAAATCT
ATATCGTGTTGAAGGGATAATTCCAGAATCACCAGCTAAACTATCTGATTTCCTCTACCAAACTGGAGAC
AGAATTACATGGGATAAATCATTGCAAGTGTATAATATGGTACACAGGATTGATTCGGACACATTCATAT
GTCATACCATTACACAAAGTTTTGCCGTGGGCTCCATTTCCCCTCGAGACTTTATCGACTTAGTGTACAT
CAAGCGCTACGAAGGAAATATGAACATTATCAGTTCTAAAAGTGTGGATTTTCCAGAATATCCTCCATCT
TCAAATTATATCCGCGGTTATAACCATCCTTGTGGCTTTGTATGTTCACCAATGGAAGAAAACCCAGCAT
ATTCCAAACTAGTGATGTTTGTCCAGACAGAAATGAGAGGAAAATTGTCCCCATCAATAATTGAAAAAAC
CATGCCTTCCAACTTAGTAAACTTCATCCTCAATGCAAAAGATGGAATAAAGGCACACAGAACTCCATCA
AGACGTGGATTTCATCATAATAGTCATTCATGA

Translation (220 aa):
MDFKAIAQQTAQEVLGYNRDTSGWKVVKTSKKITVSSKASRKFHGNLYRVEGIIPESPAKLSDFLYQTGD
RITWDKSLQVYNMVHRIDSDTFICHTITQSFAVGSISPRDFIDLVYIKRYEGNMNIISSKSVDFPEYPPS
SNYIRGYNHPCGFVCSPMEENPAYSKLVMFVQTEMRGKLSPSIIEKTMPSNLVNFILNAKDGIKAHRTPS
RRGFHHNSHS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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