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Report for CCDS33126.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33126.1 Public Homo sapiens 19 DUXA 24 110 108 CCDS HistoryNCBI Gene:503835Re-query CCDS DB by CCDS ID:33126.1Re-query CCDS DB by GeneID:503835See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33126.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000554048.3 ENSP00000452398.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000554048.3Link to Ensembl Protein Viewer:ENSP00000452398.1Re-query CCDS DB by Nucleotide ID:ENST00000554048Re-query CCDS DB by Protein ID:ENSP00000452398
Original member Current member NCBI NM_001012729.2 NP_001012747.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001012729.2Link to Protein Sequence:NP_001012747.1Re-query CCDS DB by Nucleotide ID:NM_001012729Re-query CCDS DB by Protein ID:NP_001012747Link to BLAST:NP_001012747.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001012747.1 204 A6NLW8 204 100% 0 0

Chromosomal Locations for CCDS 33126.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 57154412 57154482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57155267 57155372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57158328 57158473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57159167 57159278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57160643 57160797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57167419 57167443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGGCCGAAGACACCTATTCACACAAGATGGTAAAAACAAATCATAGGCGCTGTCGCACAAAATTCACAG
AAGAACAGTTGAAAATCCTCATCAATACCTTCAATCAAAAGCCTTACCCAGGTTATGCTACCAAACAAAA
ACTTGCTTTAGAAATCAATACAGAAGAGTCCAGAATCCAGATTTGGTTTCAGAATCGAAGAGCTAGGCAC
GGATTCCAGAAAAGACCAGAAGCTGAGACTTTAGAATCAAGCCAGAGCCAGGGGCAAGATCAACCTGGTG
TGGAGTTTCAAAGTAGAGAAGCCAGACGGTGTCGTACCACCTACAGCGCCTCTCAGTTACACACTCTCAT
CAAGGCATTTATGAAAAACCCATATCCTGGGATTGATTCCAGAGAAGAACTTGCTAAAGAAATCGGTGTT
CCAGAGTCAAGAGTCCAAATTTGGTTCCAAAATCGAAGATCTAGATTACTTCTCCAGAGAAAAAGGGAAC
CTGTGGCGTCCTTAGAACAAGAAGAGCAGGGCAAGATTCCTGAGGGACTGCAAGGTGCAGAAGATACACA
AAATGGCACCAACTTCACTAGTGACTCTCATTTCTCTGGAGCCAGAACGTGGTGA

Translation (204 aa):
MAEDTYSHKMVKTNHRRCRTKFTEEQLKILINTFNQKPYPGYATKQKLALEINTEESRIQIWFQNRRARH
GFQKRPEAETLESSQSQGQDQPGVEFQSREARRCRTTYSASQLHTLIKAFMKNPYPGIDSREELAKEIGV
PESRVQIWFQNRRSRLLLQRKREPVASLEQEEQGKIPEGLQGAEDTQNGTNFTSDSHFSGARTW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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