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Report for CCDS8438.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8438.1 Public Homo sapiens 11 JHY 24 110 108 CCDS HistoryNCBI Gene:79864Re-query CCDS DB by CCDS ID:8438.1Re-query CCDS DB by GeneID:79864See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8438.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000227349.7 ENSP00000227349.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000227349.7Link to Ensembl Protein Viewer:ENSP00000227349.2Re-query CCDS DB by Nucleotide ID:ENST00000227349Re-query CCDS DB by Protein ID:ENSP00000227349
Original member Current member EBI ENST00000531316.1 ENSP00000431669.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000531316.1Link to Ensembl Protein Viewer:ENSP00000431669.1Re-query CCDS DB by Nucleotide ID:ENST00000531316Re-query CCDS DB by Protein ID:ENSP00000431669
Original member Current member NCBI NM_001363089.2 NP_001350018.1 Accepted alive Link to Nucleotide Sequence:NM_001363089.2Link to Protein Sequence:NP_001350018.1Re-query CCDS DB by Nucleotide ID:NM_001363089Re-query CCDS DB by Protein ID:NP_001350018Link to BLAST:NP_001350018.1
Original member Current member NCBI NM_024806.4 NP_079082.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024806.4Link to Protein Sequence:NP_079082.2Re-query CCDS DB by Nucleotide ID:NM_024806Re-query CCDS DB by Protein ID:NP_079082Link to BLAST:NP_079082.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350018.1 778 Q6NUN7-1 778 100% 0 0
NP_079082.2 778 Q6NUN7-1 778 100% 0 0

Chromosomal Locations for CCDS 8438.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 122885850 122886193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 122903925 122904444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 122924897 122925010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 122934420 122935075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 122946498 122946792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 122956496 122956576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 122957363 122957491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 122959248 122959445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2337 nt):
ATGAGTAAACGTAAACTAATTCCCAAGCTCTCTATTCAATCTCCTGTCCTTCATACCAACTTAAATGTCC
AGTCCACACACCCACCTTTGAAGAAAGAAGACTTACATCGGATTTCAAAAGACTCCTTGGAATCTGATTC
AGAAAGCCTCACGCAAGAGATTATGTGCCATTCTGAGTTTGATGATCGAATCCGGGGCAACGGTATGGAG
CCCGACAGCTTAGACGAGGAGGAAAGCCCTCGATGGGGAAGCCTGCACGAGATGGAAGAGGAAGCAAGTG
GAAAAGCAGCTCAGATGGCTCGCGAGCAAAACCACCATACCTGGGACCAGGGCGCCAATAACAGGCAACA
ACCAATAGAAGACAAATATTCAGACCTCCGCTATGACCCGAACTGGAAGAGTAAGAAGGAGGAAGGGCAG
CTGCTGTCTGTGGAAGCGTTGCCGGAGTCCACGGACAGCTCTTTAGAAAATCTGCCTTTGGCTCCCCTCT
ACCCTTCCCAGGAGACGTCAATGGAACTCTCCGGGGGAAAAGGCGAGCAGAAAGAGAGTCCACAGAGTGC
AGCTTCTTTACTTGGTAGTGAATTTTTAAGCCCAAACTATGAGCATGGTGCCCGTCGCAGCAAGCCGTTT
TCAGAGCTGAGCGACAGTGACCTGGAGGAGAAGTCGAGCAGCCTTTCTCCGTACGTGAAGAGCTCAAGTT
CACATAACGAGGTTTTCCTGCCGGGATCACGTGGCCCTCGGCGAAGGAAATCCAAACAACATTTTGTGGA
AAAAAACAAGCTCACTTTGGGATTACCCACCCCGAAAACGGACTCTTATCTTCAACTTCACAATAAAAAA
AGAGGGGAATCTCATCCAGAACAGATCTCCTACCCCGTCAGAGTAACAGACAAGACGTCTATTCAGAATG
CCAAGGAAATGGAAAATGCTGCCATCGATCCTGAAGATAAATGGCATCAAAGAGCACAACAGCTAAAGAA
TTACCAGGAACACTGGTCTCAATATGAAAGTACAAAATCAAGCAATGTACCAAGAGGGCAACCTTCTGAC
ATGGTGAATGACCATCAACCTTCCAGAAGACCAGCCAAGCTCAAGATTCGAAAGCAGTGTAAACACCAGA
ATGGCCTGAAGTCTTCCACAACGGAAGAGGTGACTGCCAGTCAGGGGAACCAGAATAACCCTCCCAGGCA
GCAACAAAACCAAAATAAGCCTCTTGATACTTCAACAAAGCCTGAATCGATTGTGATTATGCATGCCTCT
AACAATGATGTACAAGCCTCAAGGGCACTTAGAAGCCACAATCTCAAAGAAACCTCCAATACATTTGCTC
CACCAAAACAGGCTTTTGACAAGGTCTTATCTAAAAACTCTACTGGATGTGACTCTGGGCTGAATGTTAA
TAAAGAAAGAGGACACAAAGACCAAGAAGAGAAAAGATTTTCATATCAGCAGCTACACACCCTTTCTGAC
ATGGATTTGAACAACCTTAATGAACTTTCTAAGAGACACGTGCTCCTGAGCCAGAAAGGCTCTCAGTTTG
TTTATCACATAAATACTCATGGATCAACCAAAAATAAGAAACAACTCAAACAGCCTTATACAGAGACAAA
ATACAGGAACTTAGAAATGTTATGGAAATTCCATTCTTCTTCTGACAGCCAGACGGTTAGAGCTTCTCCA
GATTCATGGCTCACCCAGATAATGGAGCAGCATCAGCAAGCCTTGGTGCAGCTGACCGACGTGCAGCCCA
GTGAAGGGGCCTTATCCAGCGTCACGCTTCCACCTATACTGTCAAGGGTAGAAAGTGAATCCCAACTCAG
TTCAGAGAGAAGCCAAAGAAACCAAGTGAAAATTAGCCGTAGCAATTCTGAAGGCTATCTGTTTCAACTG
GAAAAGGGAAAAAAGCATAAGAAAAGAAGCAGCAGTAAGAACACCAAGCTGAAAGGTTATCAGAAAAGAG
ACGTGAAGCTTGGAGGCCTCGGACCTGACTTTGAGTCCATCAGAGACAAAACGCAAAAATTAATACAGCA
AAAGGAATATGCAAAACAAGTCAAGGAGTACAACATGAAGACACTATCCATTCTATCAAAACCACAAACA
GAAAAAACTCAAAAGAAATCTGCTATCCCTCGGCAGAAGGCTTTGGAATACGCTAAGACCATCCCCAAAC
CCAAACCATCAAATCTGACTCATCAAGCATCAAAGGAACAAAAAAATCCAACCTATGCTGGGAAAGAAGA
AAGTTTACCTGAAATCTCACTGCTGGAAATACTGCAGAACAGACACGAAAGGGAAAAACAGGCTGTGGCT
GCTTTCAAAGTCCTTCACATCGTATAG

Translation (778 aa):
MSKRKLIPKLSIQSPVLHTNLNVQSTHPPLKKEDLHRISKDSLESDSESLTQEIMCHSEFDDRIRGNGME
PDSLDEEESPRWGSLHEMEEEASGKAAQMAREQNHHTWDQGANNRQQPIEDKYSDLRYDPNWKSKKEEGQ
LLSVEALPESTDSSLENLPLAPLYPSQETSMELSGGKGEQKESPQSAASLLGSEFLSPNYEHGARRSKPF
SELSDSDLEEKSSSLSPYVKSSSSHNEVFLPGSRGPRRRKSKQHFVEKNKLTLGLPTPKTDSYLQLHNKK
RGESHPEQISYPVRVTDKTSIQNAKEMENAAIDPEDKWHQRAQQLKNYQEHWSQYESTKSSNVPRGQPSD
MVNDHQPSRRPAKLKIRKQCKHQNGLKSSTTEEVTASQGNQNNPPRQQQNQNKPLDTSTKPESIVIMHAS
NNDVQASRALRSHNLKETSNTFAPPKQAFDKVLSKNSTGCDSGLNVNKERGHKDQEEKRFSYQQLHTLSD
MDLNNLNELSKRHVLLSQKGSQFVYHINTHGSTKNKKQLKQPYTETKYRNLEMLWKFHSSSDSQTVRASP
DSWLTQIMEQHQQALVQLTDVQPSEGALSSVTLPPILSRVESESQLSSERSQRNQVKISRSNSEGYLFQL
EKGKKHKKRSSSKNTKLKGYQKRDVKLGGLGPDFESIRDKTQKLIQQKEYAKQVKEYNMKTLSILSKPQT
EKTQKKSAIPRQKALEYAKTIPKPKPSNLTHQASKEQKNPTYAGKEESLPEISLLEILQNRHEREKQAVA
AFKVLHIV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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