NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50118.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50118.1 Public Mus musculus 17 Spats1 23 108 98 CCDS HistoryNCBI Gene:71020Re-query CCDS DB by CCDS ID:50118.1Re-query CCDS DB by GeneID:71020See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50118.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024731.8 ENSMUSP00000024731.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024731.8Link to Ensembl Protein Viewer:ENSMUSP00000024731.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000024731Re-query CCDS DB by Protein ID:ENSMUSP00000024731
Original member Current member NCBI NM_027649.3 NP_081925.2 Accepted alive Link to Nucleotide Sequence:NM_027649.3Link to Protein Sequence:NP_081925.2Re-query CCDS DB by Nucleotide ID:NM_027649Re-query CCDS DB by Protein ID:NP_081925Link to BLAST:NP_081925.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081925.2 269 A2RRY8-1 269 100% 0 0

Chromosomal Locations for CCDS 50118.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 45449163 45449191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45449435 45449550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45452678 45452740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45454091 45454211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45457158 45457319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45461162 45461310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45464427 45464580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45474799 45474814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (810 nt):
ATGGAGTCTTCCAAGGATACCCAGCACGGTGATGCTCTAGAATCTAAAAGTTGCTTGGCTAACAGGACGT
CCTCTCGTCAGAACAAAAGGACCAGCCTCTCGTCTTCTGACGGAACAGGTCCGAGAGTCACTGAGTCCCT
AGGCCTTCCCAGGGTGTTGACTCCCTCTGACACGGCTGCGGAGCTGGGTCAGAAGACCTCCTCCTCTTCG
TCTTCCTCCTCTTCCTCTGCTCAGTCTAATCGTTCCTCAAAAGTTTCGCTGCCTGAAATCCCAAAGGAAA
AATATCCCGAGGAATTCAGCCTGCTCAATTCACAGACAGAAGATGGGCAGCGTCCTGAGTGGACATTTTA
TCCAAGGTTCAGCAGCAACATCCACACCTACCACATTGGAAAGCAGTGCTTCTTCAATGGGGTCTTCCGG
GGCAACAGGAGGTCTGTGGCAGAGAGGACAGTGGACAACAGCCTCGGGAAGAAGAAATACGATATTGATC
CCAGAAATGGAATCCCCAAATTGACACCAGGGGATAATCCGTACATGTTCCCAGAACAGAGTAAAGAGTT
CTTCAAAGCGGGAGCAACTTTGCCTCCGGTGAACTTCTCACTGGGACCTTACGAGAAAAAATTCGACACA
TTTATCCCACTTGAGCCACTTCCAAAAATTCCCAATCTGCCTTTCTGGGAGAAGGAAAAAGCCAACAATT
TGAAGAACGAGATAAAAGAAGTCGAGGAGCTTGACAACTGGCAGGTGCCGATGCCCTTCCTACATGGTTT
CTTCTCCACTGGTGCTTCCAACTTTTCAAGACAACAATGA

Translation (269 aa):
MESSKDTQHGDALESKSCLANRTSSRQNKRTSLSSSDGTGPRVTESLGLPRVLTPSDTAAELGQKTSSSS
SSSSSSAQSNRSSKVSLPEIPKEKYPEEFSLLNSQTEDGQRPEWTFYPRFSSNIHTYHIGKQCFFNGVFR
GNRRSVAERTVDNSLGKKKYDIDPRNGIPKLTPGDNPYMFPEQSKEFFKAGATLPPVNFSLGPYEKKFDT
FIPLEPLPKIPNLPFWEKEKANNLKNEIKEVEELDNWQVPMPFLHGFFSTGASNFSRQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH