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Report for CCDS27168.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27168.1 Public Mus musculus 14 Rcbtb1 23 108 98 CCDS HistoryNCBI Gene:71330Re-query CCDS DB by CCDS ID:27168.1Re-query CCDS DB by GeneID:71330See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27168.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022551.13 ENSMUSP00000022551.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022551.13Link to Ensembl Protein Viewer:ENSMUSP00000022551.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022551Re-query CCDS DB by Protein ID:ENSMUSP00000022551
Original member Current member EBI ENSMUST00000043227.12 ENSMUSP00000037030.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043227.12Link to Ensembl Protein Viewer:ENSMUSP00000037030.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000043227Re-query CCDS DB by Protein ID:ENSMUSP00000037030
Original member Current member NCBI NM_001360610.1 NP_001347539.1 Accepted alive Link to Nucleotide Sequence:NM_001360610.1Link to Protein Sequence:NP_001347539.1Re-query CCDS DB by Nucleotide ID:NM_001360610Re-query CCDS DB by Protein ID:NP_001347539Link to BLAST:NP_001347539.1
Original member Current member NCBI NM_027764.2 NP_082040.2 Accepted alive Link to Nucleotide Sequence:NM_027764.2Link to Protein Sequence:NP_082040.2Re-query CCDS DB by Nucleotide ID:NM_027764Re-query CCDS DB by Protein ID:NP_082040Link to BLAST:NP_082040.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347539.1 531 Q6NXM2 531 99.8117% 0 1
NP_082040.2 531 Q6NXM2 531 99.8117% 0 1

Chromosomal Locations for CCDS 27168.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 59209969 59210094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59210435 59210585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59217596 59217762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59221417 59221575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59223193 59223300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59224633 59224775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59226308 59226498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59228255 59228381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59229887 59230038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59230410 59230540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59235219 59235359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1596 nt):
ATGGTGGATGTAGGAAAGTGGCCAATCTTCACTCTGCTCTCACCCCAGGAAGCTGGATCTATCAGGAAAG
CATGTGTCTTTGGTACCTCTGCCAATGAGGCGATCTATGTCACTGACAATGATGAGGTCTTCGTGTTTGG
ACTGAACTACAGTAACTGTCTAGGAACTGGAGATAACCAGAGCACTCTGGTGCCCAAGAAACTAGAAGCT
TTGTGTGGAAAAAAGATCAAAAGTCTTAGTTACGGGAGTGGCCCCCATGTCCTCCTCACCACTGAAGATG
GAGTCGTCTATGCCTGGGGCCATAATGGATACAGCCAACTGGGAAATGGGACCACCAACCAAGGCATTGC
TCCTGTCCAAGTCTGTACTAATCTCTTGATCAAGCAGGTGATTGAAGTAGCTTGTGGTTCACATCATTCG
ATGGCTTTAGCAGCTGATGGAGAGTTATTTGCTTGGGGCTATAACAACTGTGGTCAGGTGGGATCAGGAT
CTACAGCCAATCAGCCAACTCCTCGGAAAGTTACAAACTGTTTACATACCAAGAGAGTGGTCAACATTGC
CTGTGGTCAGACCTCATCCATGGCTGTTCTGGACAGTGGTGAGGTGTATGGCTGGGGCTACAATGGCAAT
GGACAGCTGGGCTTGGGAAACAATGGCAACCAGTTGACCCCAGTGAGAGTGGCGGCTCTGCACGGCATGT
GTGTGAACCAGATTGTCTGTGGTTATGCACATACACTAGCACTCACAGATGAGGGCTTGCTCTATGCCTG
GGGAGCTAACACATATGGGCAGCTGGGAACTGGAAGTAAAAATAACCTGCTGAGCCCAACACAAATCATG
GTGGAAAAAGAAAGGGTTATAGAGATTGCAGCTTGCCACTCCACCCACACATCTGCTGCCAAGACACAAG
GCGGGCACGTGTACATGTGGGGCCAGTGCCGGGGCCAGTCGGTGATCCTTCCGCACCTCACCCACTTCTG
CTGCACCGATGACGTGTTTGCCTGCTTTGGCACCCCGGCTGTCTCATGGCGCCTCCTGTCTGTAGAGCAT
GAAGACTTTTTAACAGTTGCAGAGTCACTGAAGAAAGAATTTGATAGTCCAGAAACTGCTGATCTAAAGT
TTCGAATTGATGGAAAATATATTCATGTCCATAAAGCTGTTCTGAAAATCAGGTGTGAGCACTTTCGGTC
CATGTTTCAGTCTTATTGGAATGAGGATATGAAGGAAGTGATAGAGATAGACCAGTTTTCTTACCCTGTG
TACCGTGCCTTTCTCCAGTACCTCTACACAGACACAGTGGACCTGCCTCCTGAGGATGCTATAGGCCTTT
TGGACTTGGCAACGTCGTACTGTGAGAACAGACTGAAGAGGCTTTGTCAGCACATCATCAAGCGAGGAAT
TACTGTGGAGAACGCCTTTTCATTGTTCTCTGCTGCAGTCAGATATGACGCAGAGGATTTAGAAGAATTC
TGCTTTAAGTTTTGCATCAATCATTTGACAGAAGTTACCCAGACGGCTGCGTTCTGGCAAATGGATGGTC
CCCTGCTAAAGGAGTTCATTGCTAAAGCCAGTAAATGTGGAGCCTTTAAGAACTGA

Translation (531 aa):
MVDVGKWPIFTLLSPQEAGSIRKACVFGTSANEAIYVTDNDEVFVFGLNYSNCLGTGDNQSTLVPKKLEA
LCGKKIKSLSYGSGPHVLLTTEDGVVYAWGHNGYSQLGNGTTNQGIAPVQVCTNLLIKQVIEVACGSHHS
MALAADGELFAWGYNNCGQVGSGSTANQPTPRKVTNCLHTKRVVNIACGQTSSMAVLDSGEVYGWGYNGN
GQLGLGNNGNQLTPVRVAALHGMCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGSKNNLLSPTQIM
VEKERVIEIAACHSTHTSAAKTQGGHVYMWGQCRGQSVILPHLTHFCCTDDVFACFGTPAVSWRLLSVEH
EDFLTVAESLKKEFDSPETADLKFRIDGKYIHVHKAVLKIRCEHFRSMFQSYWNEDMKEVIEIDQFSYPV
YRAFLQYLYTDTVDLPPEDAIGLLDLATSYCENRLKRLCQHIIKRGITVENAFSLFSAAVRYDAEDLEEF
CFKFCINHLTEVTQTAAFWQMDGPLLKEFIAKASKCGAFKN


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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