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Report for CCDS19494.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19494.1 Public Mus musculus 5 Lrrc8d 23 108 98 CCDS HistoryNCBI Gene:231549Re-query CCDS DB by CCDS ID:19494.1Re-query CCDS DB by GeneID:231549See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19494.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060531.15 ENSMUSP00000057293.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060531.15Link to Ensembl Protein Viewer:ENSMUSP00000057293.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000060531Re-query CCDS DB by Protein ID:ENSMUSP00000057293
Original member Current member EBI ENSMUST00000120847.7 ENSMUSP00000113603.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120847.7Link to Ensembl Protein Viewer:ENSMUSP00000113603.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120847Re-query CCDS DB by Protein ID:ENSMUSP00000113603
Original member Current member NCBI NM_001122768.1 NP_001116240.1 Accepted alive Link to Nucleotide Sequence:NM_001122768.1Link to Protein Sequence:NP_001116240.1Re-query CCDS DB by Nucleotide ID:NM_001122768Re-query CCDS DB by Protein ID:NP_001116240Link to BLAST:NP_001116240.1
Original member Current member NCBI NM_178701.3 NP_848816.3 Accepted alive Link to Nucleotide Sequence:NM_178701.3Link to Protein Sequence:NP_848816.3Re-query CCDS DB by Nucleotide ID:NM_178701Re-query CCDS DB by Protein ID:NP_848816Link to BLAST:NP_848816.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116240.1 859 Q8BGR2 859 100% 0 0
NP_848816.3 859 Q8BGR2 859 100% 0 0

Chromosomal Locations for CCDS 19494.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 105811726 105814305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2580 nt):
ATGTTTACCCTTGCGGAAGTTGCTTCACTTAATGACATTCAGCCAACTTACCGAATCCTGAAGCCATGGT
GGGACGTGTTTATGGATTACCTGGCAGTCGTTATGCTGATGGTAGCCATCTTTGCAGGGACCATGCAACT
TACCAAAGATCAGGTGGTGTGTTTGCCAGTGTTGCCGTCGCCTGCAAATTCAAAAGCGCACACACCACCC
GGAAATGCTGACATCACCACCGAAGTCCCCAGGATGGAAACAGCCACACACCAAGACCAAAACGGGCAGA
CGACAACGAATGACGTTGCCTTTGGCACATCCGCTGTGACCCCTGACATACCTCTCCAAGCCACCCATCC
TCATGCAGAGTCCACCCTTCCCAATCAGGAGGCGAAGAAGGAGAAGAGAGACCCAACGGGCCGAAAAACC
AACTTGGATTTTCAGCAGTACGTATTTATCAATCAGATGTGTTACCATCTGGCCCTCCCTTGGTACTCCA
AGTACTTTCCATACCTTGCCCTTATACACACCATCATCCTTATGGTCAGTAGCAACTTTTGGTTCAAATA
TCCCAAAACGTGCTCCAAGGTTGAGCATTTTGTTTCAATATTAGGAAAGTGTTTCGAATCTCCCTGGACA
ACTAAGGCGCTGTCAGAGACGGCCTGTGAAGACTCTGAGGAGAACAAGCAGCGGATAACGGGCGCCCAGA
CCCTGCCGAAGCATGTGTCCACCAGCAGCGATGAGGGGAGCCCCAGCGCCAGCACCCCCATGATCAACAA
AACTGGCTTCAAGTTCTCGGCTGAGAAACCGGTGATCGAAGTTCCCAGCATGACAATCCTGGACAAGAAA
GACGGGGAGCAGGCCAAAGCCCTGTTTGAGAAAGTAAGGAAATTCCGTGCCCACGTGGAAGACAGTGACT
TGATCTATAAGCTCTATGTGGTCCAAACGCTCATCAAAACTGCCAAGTTCATTTTTATCCTCTGCTACAC
TGCGAACTTTGTCAACGCCATCAGCTTCGAGCACGTCTGCAAGCCAAAAGTCGAGCACCTCACGGGGTAC
GAGGTGTTCGAGTGCACTCACAATATGGCCTACATGTTGAAAAAGCTGCTCATCAGCTACATCTCCATCA
TCTGCGTCTACGGCTTTATCTGCCTCTACACTCTCTTCTGGCTATTCAGGATCCCTCTGAAGGAGTACTC
GTTTGAGAAAGTCCGGGAGGAGAGCAGCTTCAGCGACATCCCGGATGTCAAGAACGACTTTGCGTTCCTT
CTGCACATGGTCGACCAGTACGACCAGCTCTATTCCAAGCGTTTCGGTGTGTTCTTATCCGAAGTCAGTG
AGAACAAACTGAGGGAAATCAGCCTGAACCATGAGTGGACTTTCGAGAAACTCAGGCAGCACGTGTCCCG
CAATGCCCAGGATAAGCAGGAGCTGCACCTCTTCATGCTGTCCGGGGTGCCCGACGCTGTCTTTGACCTC
ACAGACCTGGATGTGCTAAAACTTGAACTGATCCCCGAAGCAAAAATTCCTGCCAAGATCTCTCAGATGA
CTAACCTCCAAGAGCTCCACCTCTGCCACTGCCCTGCAAAGGTGGAACAGACTGCCTTTAGCTTCCTCCG
AGATCACTTGAGATGCCTTCACGTGAAGTTCACGGATGTGGCTGAAATCCCCGCCTGGGTGTATCTGCTT
AAAAACCTGCGGGAGCTGTACTTGATCGGCAATTTGAACTCGGAAAACAATAAGATGATCGGCCTCGAGT
CGCTGCGAGAGCTGCGGCACCTTAAGATCCTCCACGTGAAGAGTAATCTAACCAAAGTCCCCTCTAACAT
CACCGACGTGGCTCCGCACCTCACGAAGCTCGTCATCCACAACGACGGGACCAAGCTCTTGGTCCTGAAC
AGCCTGAAGAAGATGATGAACGTGGCCGAGCTCGAGCTGCAGAACTGTGAGCTGGAGAGGATCCCACACG
CCATCTTCAGCCTCTCTAATCTGCAGGAGCTGGATTTAAAGTCAAACAACATCCGGACGATCGAGGAGAT
CATCAGCTTCCAACATCTGAAGCGACTGACTTGCTTAAAGCTGTGGCACAATAAAATTGTGGCCATCCCA
CCCTCCATTACCCATGTCAAGAACCTGGAGTCCCTCTACTTCTCCAACAACAAGCTCGAGTCTTTACCGA
CGGCAGTGTTTAGTTTACAGAAACTCAGATGCTTAGACGTCAGCTATAACAACATTTCCACGATCCCCAT
AGAGATAGGTTTGCTCCAGAACCTGCAGCATTTGCACATCACAGGGAACAAGGTGGACATTCTGCCAAAA
CAGTTGTTTAAGTGCGTGAAGTTGAGGACTTTGAACCTGGGGCAGAACTGTATCGCCTCCCTGCCTGAGA
AAATCAGTCAGCTCACCCAGCTCACTCAGCTGGAGCTGAAGGGCAACTGCCTAGACCGCCTGCCAGCCCA
GCTGGGCCAGTGTCGGATGCTCAAGAAGAGCGGGCTTGTTGTAGAAGACCAACTGTTTGACACGCTGCCA
CTAGAAGTCAAAGAGGCATTGAATCAAGATGTCAATGTCCCCTTTGCAAACGGGATTTGA

Translation (859 aa):
MFTLAEVASLNDIQPTYRILKPWWDVFMDYLAVVMLMVAIFAGTMQLTKDQVVCLPVLPSPANSKAHTPP
GNADITTEVPRMETATHQDQNGQTTTNDVAFGTSAVTPDIPLQATHPHAESTLPNQEAKKEKRDPTGRKT
NLDFQQYVFINQMCYHLALPWYSKYFPYLALIHTIILMVSSNFWFKYPKTCSKVEHFVSILGKCFESPWT
TKALSETACEDSEENKQRITGAQTLPKHVSTSSDEGSPSASTPMINKTGFKFSAEKPVIEVPSMTILDKK
DGEQAKALFEKVRKFRAHVEDSDLIYKLYVVQTLIKTAKFIFILCYTANFVNAISFEHVCKPKVEHLTGY
EVFECTHNMAYMLKKLLISYISIICVYGFICLYTLFWLFRIPLKEYSFEKVREESSFSDIPDVKNDFAFL
LHMVDQYDQLYSKRFGVFLSEVSENKLREISLNHEWTFEKLRQHVSRNAQDKQELHLFMLSGVPDAVFDL
TDLDVLKLELIPEAKIPAKISQMTNLQELHLCHCPAKVEQTAFSFLRDHLRCLHVKFTDVAEIPAWVYLL
KNLRELYLIGNLNSENNKMIGLESLRELRHLKILHVKSNLTKVPSNITDVAPHLTKLVIHNDGTKLLVLN
SLKKMMNVAELELQNCELERIPHAIFSLSNLQELDLKSNNIRTIEEIISFQHLKRLTCLKLWHNKIVAIP
PSITHVKNLESLYFSNNKLESLPTAVFSLQKLRCLDVSYNNISTIPIEIGLLQNLQHLHITGNKVDILPK
QLFKCVKLRTLNLGQNCIASLPEKISQLTQLTQLELKGNCLDRLPAQLGQCRMLKKSGLVVEDQLFDTLP
LEVKEALNQDVNVPFANGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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