NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS21369.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21369.1 Public Mus musculus 7 Klhl25 23 108 98 CCDS HistoryNCBI Gene:207952Re-query CCDS DB by CCDS ID:21369.1Re-query CCDS DB by GeneID:207952See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21369.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092073.10 ENSMUSP00000089707.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092073.10Link to Ensembl Protein Viewer:ENSMUSP00000089707.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000092073Re-query CCDS DB by Protein ID:ENSMUSP00000089707
Original member Current member EBI ENSMUST00000171155.3 ENSMUSP00000133175.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171155.3Link to Ensembl Protein Viewer:ENSMUSP00000133175.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000171155Re-query CCDS DB by Protein ID:ENSMUSP00000133175
Original member Current member EBI ENSMUST00000206019.1 ENSMUSP00000146102.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000206019.1Link to Ensembl Protein Viewer:ENSMUSP00000146102.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000206019Re-query CCDS DB by Protein ID:ENSMUSP00000146102
Original member Current member NCBI NM_001122780.1 NP_001116252.1 Accepted alive Link to Nucleotide Sequence:NM_001122780.1Link to Protein Sequence:NP_001116252.1Re-query CCDS DB by Nucleotide ID:NM_001122780Re-query CCDS DB by Protein ID:NP_001116252Link to BLAST:NP_001116252.1
Original member Current member NCBI NM_029652.1 NP_083928.1 Accepted alive Link to Nucleotide Sequence:NM_029652.1Link to Protein Sequence:NP_083928.1Re-query CCDS DB by Nucleotide ID:NM_029652Re-query CCDS DB by Protein ID:NP_083928Link to BLAST:NP_083928.1
Original member Current member NCBI NM_182782.2 NP_877583.1 Accepted alive Link to Nucleotide Sequence:NM_182782.2Link to Protein Sequence:NP_877583.1Re-query CCDS DB by Nucleotide ID:NM_182782Re-query CCDS DB by Protein ID:NP_877583Link to BLAST:NP_877583.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116252.1 589 Q8R2P1 589 100% 0 0
NP_083928.1 589 Q8R2P1 589 100% 0 0
NP_877583.1 589 Q8R2P1 589 100% 0 0

Chromosomal Locations for CCDS 21369.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 75865348 75867117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1770 nt):
ATGTCAGTCAGTGTTCACGAGACCCGCAAGTCGAGGAGCAGCACGGGCTCCATGAACATCTCAGTCTTCC
ACAAGGCTTCACACCCTGACTGTGTGCTGGCCCACCTCAACACTCTGCGCAAGCACTGCATGTTCACGGA
TGTCACACTCTGGGCTGGTGACCGAGCCTTTCCTTGCCATCGTGCGGTGCTGGCTGCCTCCAGCCGATAC
TTTGAGGCCATGTTCAGCCACGGCCTGCGGGAAAGCCGGGATGATACGGTCAACTTCCAGGACAACCTGC
ACCCCGAGGTGTTGGAGCTGCTGTTGGACTTTGCCTACTCTTCTCGCATCGTCATCAATGAGGAGAACGC
GGAGTCACTACTAGAGGCTGGTGACATGCTGCAGTTCCATGATGTCCGGGATGCAGCTGCTGAGTTCCTG
GAGAAGAATCTTTCCCCCTCCAACTGCCTTGGCATGATGGTGCTGTCTGATGCCCACCAGTGCCGACGGC
TCTACGAGTTCTCATGCCGAATGTCCCTGGTGCATTTTGAGACGGTGCGGCAGAGCGAGGACTTCAACAG
TCTCTCTAGGGACACGCTGTTGGACCTCATCTCCAGAGATGAGCTGGAGACTGAGGATGAGCGCGTGGTC
TTTGAGGCCATCCTGCAGTGGGTGAAGCATGACTTAGAGCAGAGGAAGGCTCACCTGCCCCTGCTCCTGC
GTAACGTGCGACTGGCCCTGCTGCCCTCAGACTGCCTGAAGAATGCCGTATCTGGAGAGGCCCTCCTCAT
GGCGGACGAGTGCACCAAGCTCATCTTAGACGAGGCCTTCCGCTGCAAGACCAAGATCTTGCTGAATGAT
GGTGTGGTCACCAGTCCCTTTGCCCGGCCTCGCAAGGCAGGTCACACACTGCTCATCTTGGGAGGCCAGA
CCTTCATGTGTGACAAGATCTACCAAGTGGACCACAAAGCCAAGGAGATTATCCCCAAGGCAGATCTGCC
AAGCCCCCGGAAGGAGTTCAGTGCTTCAGCGATTGGTTGCAAGGTCTATGTGACTGGAGGCAGGGGCTCT
GAGAATGGAGTCTCTAAGGATGTCTGGGTGTATGACACTGTCCATGAGGAATGGTCTAAGGCCGCCCCTA
TGCTGATTGCCCGCTTTGGCCATGGCTCAGCCGAGCTGGAGAACTGTCTCTATGTGGTGGGGGGGCATAC
ATCCCTAGCAGGTATTTTCCCTGCCTCCCCTTCTGTCTCCCTGAAGCAAGTAGAGAAATATGACCCTGGG
GATAATAAGTGGACTATGGTGGCCCCCATGAGAGACGGTGTCAGCAATGCTGCAGTGGTGAGTGCCAAGC
TGAAACTCTTTGTGTTTGGAGGGACCAGCATCCACCGAGATATGGTGTCCAAAGTCCAGTGTTTTGACCC
CTCGGAGAACCGGTGGACAATCAAAGCAGAGTGTCCCCAGCCCTGGCGATACACAGCCGCCGCTGTCCTG
GGCAGCCAGATCTTCATCATGGGAGGTGATACAGAGTACACAGCAGCTTCAGCCTACCGCTTCGACTGTG
AGACCAACCAGTGGACGCGGATTGGGGACATGACAGCCAAACGCATGTCCTGTCATGCCGTGGCTTCAGG
CAACAAGCTGTATGTGGTGGGAGGCTACTTTGGGACCCAGAGGTGTAAGACCCTGGACTGCTATGACCCT
ACTTCAGACACATGGAACTGCATCACCACTGTGCCCTACTCTCTCATTCCCACGGCCTTTGTTAGCACCT
GGAAGCATCTGCCTGCATGA

Translation (589 aa):
MSVSVHETRKSRSSTGSMNISVFHKASHPDCVLAHLNTLRKHCMFTDVTLWAGDRAFPCHRAVLAASSRY
FEAMFSHGLRESRDDTVNFQDNLHPEVLELLLDFAYSSRIVINEENAESLLEAGDMLQFHDVRDAAAEFL
EKNLSPSNCLGMMVLSDAHQCRRLYEFSCRMSLVHFETVRQSEDFNSLSRDTLLDLISRDELETEDERVV
FEAILQWVKHDLEQRKAHLPLLLRNVRLALLPSDCLKNAVSGEALLMADECTKLILDEAFRCKTKILLND
GVVTSPFARPRKAGHTLLILGGQTFMCDKIYQVDHKAKEIIPKADLPSPRKEFSASAIGCKVYVTGGRGS
ENGVSKDVWVYDTVHEEWSKAAPMLIARFGHGSAELENCLYVVGGHTSLAGIFPASPSVSLKQVEKYDPG
DNKWTMVAPMRDGVSNAAVVSAKLKLFVFGGTSIHRDMVSKVQCFDPSENRWTIKAECPQPWRYTAAAVL
GSQIFIMGGDTEYTAASAYRFDCETNQWTRIGDMTAKRMSCHAVASGNKLYVVGGYFGTQRCKTLDCYDP
TSDTWNCITTVPYSLIPTAFVSTWKHLPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH