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Report for CCDS93626.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93626.1 Public Homo sapiens 4 MFSD8 24 110 108 CCDS HistoryNCBI Gene:256471Re-query CCDS DB by CCDS ID:93626.1Re-query CCDS DB by GeneID:256471See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93626.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000641178.1 ENSP00000492989.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000641178.1Link to Ensembl Protein Viewer:ENSP00000492989.1Re-query CCDS DB by Nucleotide ID:ENST00000641178Re-query CCDS DB by Protein ID:ENSP00000492989
Original member NCBI NM_001371590.1 NP_001358519.1 Updated not alive Link to Nucleotide Sequence:NM_001371590.1Link to Protein Sequence:NP_001358519.1Re-query CCDS DB by Nucleotide ID:NM_001371590Re-query CCDS DB by Protein ID:NP_001358519
Current member NCBI NM_001371590.2 NP_001358519.1 Accepted alive Link to Nucleotide Sequence:NM_001371590.2Link to Protein Sequence:NP_001358519.1Re-query CCDS DB by Nucleotide ID:NM_001371590Re-query CCDS DB by Protein ID:NP_001358519Link to BLAST:NP_001358519.1

Chromosomal Locations for CCDS 93626.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 127920630 127920836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127921524 127921771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127921860 127921963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127930683 127930817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127932985 127933093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127938783 127938838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127939853 127939997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127942045 127942158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127943752 127943992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127949804 127949847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127957501 127957519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGTTTCTCAGCAGTGTAGGGTTTTCTGTAGTGATGATGTCCATATGGCCATATCTCCAAAAGATTGATC
CGACAGCTGATACAAGTTTTTTGGGCTGGGTTATTGCTTCATATAGTCTTGGCCAAATGGTAGCTTCACC
TATATTTGGTTTATGGTCTAATTATAGACCAAGAAAAGAGCCTCTTATTGTCTCCATCTTGATTTCCGTG
GCAGCCAACTGCCTCTATGCATATCTCCACATCCCAGCTTCTCATAATAAATACTACATGCTGGTTGCTC
GTGGATTGTTGGGAATTGGAGCAGGAAATGTAGCAGTTGTTAGATCATATACTGCTGGTGCTACTTCCCT
TCAGGAAAGAACAAGTTCCATGGCAAACATAAGCATGTGTCAAGCATTAGGTTTTATTCTAGGTCCAGTT
TTTCAGACTTGTTTTACATTCCTTGGAGAAAAAGGTGTGACATGGGATGTGATTAAACTGCAGATAAACA
TGTATACAACACCAGTTTTACTTAGCGCCTTCCTGGGAATTTTAAATATTATTCTGATCCTTGCCATACT
AAGAGAACATCGTGTGGATGACTCAGGAAGACAGTGTAAAAGTATTAATTTTGAAGAAGCAAGTACAGAT
GAAGCTCAGGTTCCCCAAGGAAATATTGACCAGGTTGCTGTTGTGGCCATCAATGTTCTGTTTTTTGTGA
CTCTATTTATCTTTGCCCTTTTTGAAACCATCATTACTCCATTAACAATGGATATGTATGCCTGGACTCA
AGAACAAGCTGTGTTATATAATGGCATAATACTTGCTGCTCTTGGGGTTGAAGCCGTTGTTATTTTCTTA
GGAGTTAAGTTGCTTTCCAAAAAGATTGGCGAGCGTGCTATTCTACTGGGAGGACTCATCGTTGTATGGG
TTGGCTTCTTTATCTTGTTACCTTGGGGAAATCAATTTCCCAAAATACAGTGGGAAGATTTGCACAATAA
TTCAATCCCTAATACCACATTTGGGGAAATTATTATTGGTCTTTGGAAGTCTCCAATGGAAGATGACAAT
GAAAGACCAACTGGTTGCTCGATTGAACAAGCCTGGTGCCTCTACACCCCGGTGATTCATCTGGCCCAGT
TCCTTACATCAGCTGTGCTAATAGGATTAGGCTATCCAGTCTGCAATCTTATGTCCTATACTCTATATTC
AAAAATTCTAGGACCAAAACCTCAGGGTGTATACATGGGCTGGTTAACAGCATCTGGAAGTGGAGCCCGG
ATTCTTGGGCCTATGTTCATCAGCCAAGTGTATGCTCACTGGGGACCACGATGGGCATTCAGCCTGGTGT
GTGGAATAATAGTGCTCACCATCACCCTCCTGGGAGTGGTTTACAAAAGACTCATTGCTCTTTCTGTAAG
ATATGGGAGGATTCAGGAATAA

Translation (473 aa):
MFLSSVGFSVVMMSIWPYLQKIDPTADTSFLGWVIASYSLGQMVASPIFGLWSNYRPRKEPLIVSILISV
AANCLYAYLHIPASHNKYYMLVARGLLGIGAGNVAVVRSYTAGATSLQERTSSMANISMCQALGFILGPV
FQTCFTFLGEKGVTWDVIKLQINMYTTPVLLSAFLGILNIILILAILREHRVDDSGRQCKSINFEEASTD
EAQVPQGNIDQVAVVAINVLFFVTLFIFALFETIITPLTMDMYAWTQEQAVLYNGIILAALGVEAVVIFL
GVKLLSKKIGERAILLGGLIVVWVGFFILLPWGNQFPKIQWEDLHNNSIPNTTFGEIIIGLWKSPMEDDN
ERPTGCSIEQAWCLYTPVIHLAQFLTSAVLIGLGYPVCNLMSYTLYSKILGPKPQGVYMGWLTASGSGAR
ILGPMFISQVYAHWGPRWAFSLVCGIIVLTITLLGVVYKRLIALSVRYGRIQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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