NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3472.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3472.2 Public Homo sapiens 4 COX7B2 24 110 108 CCDS HistoryNCBI Gene:170712Re-query CCDS DB by CCDS ID:3472.2See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 3472.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355591.8 ENSP00000347799.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000355591.8Link to Ensembl Protein Viewer:ENSP00000347799.3Re-query CCDS DB by Nucleotide ID:ENST00000355591Re-query CCDS DB by Protein ID:ENSP00000347799
Original member Current member EBI ENST00000396533.5 ENSP00000379784.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396533.5Link to Ensembl Protein Viewer:ENSP00000379784.1Re-query CCDS DB by Nucleotide ID:ENST00000396533Re-query CCDS DB by Protein ID:ENSP00000379784
Original member Current member NCBI NM_130902.3 NP_570972.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_130902.3Link to Protein Sequence:NP_570972.2Re-query CCDS DB by Nucleotide ID:NM_130902Re-query CCDS DB by Protein ID:NP_570972Link to BLAST:NP_570972.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_570972.2 81 Q8TF08 81 100% 0 0

Chromosomal Locations for CCDS 3472.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 46734947 46735192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (246 nt):
ATGATGTTTCCCTTGGCCAGAAATGCACTAAGCAGTCTCAAGATTCAAAGCATTCTGCAAAGCATGGCAA
GACATAGCCATGTAAAACACTCACCAGATTTTCATGATAAATATGGTAATGCTGTGCTAGCCAGTGGAAC
TGCTTTCTGTGTTGCTACATGGGTGTTTACAGCCACTCAGATTGGAATAGAATGGAACCTATCCCCTGTT
GGCAGAGTTACCCCAAAAGAGTGGAAACATCAGTAA

Translation (81 aa):
MMFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQIGIEWNLSPV
GRVTPKEWKHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH