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Report for CCDS16738.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16738.1 Public Mus musculus 2 Idh3b 23 108 98 CCDS HistoryNCBI Gene:170718Re-query CCDS DB by CCDS ID:16738.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16738.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028892.10 ENSMUSP00000028892.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028892.10Link to Ensembl Protein Viewer:ENSMUSP00000028892.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000028892Re-query CCDS DB by Protein ID:ENSMUSP00000028892
Original member Current member NCBI NM_130884.4 NP_570954.1 Accepted alive Link to Nucleotide Sequence:NM_130884.4Link to Protein Sequence:NP_570954.1Re-query CCDS DB by Nucleotide ID:NM_130884Re-query CCDS DB by Protein ID:NP_570954Link to BLAST:NP_570954.1

Chromosomal Locations for CCDS 16738.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 130279640 130279726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130280263 130280323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130280457 130280551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130280956 130281102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130281213 130281315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130281407 130281540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130281638 130281770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130281848 130281908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130283709 130283829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130283938 130284036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130284171 130284248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130284382 130284417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1155 nt):
ATGGCAGCGCTGAGCAATGTCCGCTGGCTGACCCGAGCGGTGCTCGCCGCTCGGAACTCCGGGGCATGGA
GAGGTCTCGGAACATCTACGGCTCACGCCGCTTCCCAGAGCCAGGCACAAGATGTGAGGGTGGAGGGTGC
CTTTCCTGTGACCATGCTGCCTGGAGACGGCGTGGGGCCAGAGCTCATGCATGCTGTCAAGGAAGTGTTC
AAGGCTGCTGCTGTCCCTGTGGAATTTAAGGAGCATCATCTGAGCGAGGTGCAGAATATGGCTTCTGAGG
AGAAGCTGGAGCAGGTGCTGAGTTCCATGAAGGAGAACAAAGTTGCCATCATTGGAAAGATCTATACCCC
AATGGAGTATAAGGGTGAACTAGCCTCCTATGATATGCAGCTGAGGCGTAAGTTGGATTTGTTTGCCAAC
GTAGTCCACGTGAAGTCACTTCCTGGATACAAGACTCGGCACAACAATCTAGACCTGGTTATCATTCGAG
AGCAGACAGAAGGGGAGTATAGCTCTCTGGAACATGAGAGCGCCAAGGGTGTCATTGAGTGCCTGAAGAT
CGTCACTCGCACCAAGTCTCAGAGGATTGCAAAGTTTGCGTTCGACTATGCCACCAAGAAAGGGCGGAGC
AAGGTCACAGCCGTCCATAAAGCCAACATCATGAAACTAGGGGATGGCTTGTTCTTGCAGTGCTGTGAGG
AAGTTGCTGAACTGTACCCTAAAATCAAGTTTGAAACCATGATCATAGACAACTGCTGCATGCAGCTGGT
GCAGAACCCTTACCAGTTTGATGTGCTCGTGATGCCCAATCTCTATGGCAACATAATTGACAATCTGGCT
GCTGGCCTTGTTGGGGGAGCTGGCGTGGTTCCTGGGGAGAGCTACAGTGCAGAGTATGCAGTTTTTGAGA
CGGGTGCTCGGCACCCATTTGCCCAGGCAGTGGGCAGGAATATAGCCAACCCCACAGCCATGCTGCTGTC
GGCCACCAACATGCTGCGGCATCTCAATCTTGAGTATCACTCCAGCATGATTGCAGATGCAGTGAAGAAA
GTGATCAAAGCTGGCAAGGTACGGACTCGAGACATGGGAGGCTACAGCACCACAACTGACTTCATCAAGT
CTGTCATCGGCCACCTGCACCCCCATGGGGGCTAG

Translation (384 aa):
MAALSNVRWLTRAVLAARNSGAWRGLGTSTAHAASQSQAQDVRVEGAFPVTMLPGDGVGPELMHAVKEVF
KAAAVPVEFKEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIYTPMEYKGELASYDMQLRRKLDLFAN
VVHVKSLPGYKTRHNNLDLVIIREQTEGEYSSLEHESAKGVIECLKIVTRTKSQRIAKFAFDYATKKGRS
KVTAVHKANIMKLGDGLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLA
AGLVGGAGVVPGESYSAEYAVFETGARHPFAQAVGRNIANPTAMLLSATNMLRHLNLEYHSSMIADAVKK
VIKAGKVRTRDMGGYSTTTDFIKSVIGHLHPHGG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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