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Report for CCDS41075.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41075.1 Public Mus musculus X Arr3 23 108 98 CCDS HistoryNCBI Gene:170735Re-query CCDS DB by CCDS ID:41075.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 41075.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113769.7 ENSMUSP00000109398.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113769.7Link to Ensembl Protein Viewer:ENSMUSP00000109398.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113769Re-query CCDS DB by Protein ID:ENSMUSP00000109398
Original member Current member NCBI NM_133205.3 NP_573468.1 Accepted alive Link to Nucleotide Sequence:NM_133205.3Link to Protein Sequence:NP_573468.1Re-query CCDS DB by Nucleotide ID:NM_133205Re-query CCDS DB by Protein ID:NP_573468Link to BLAST:NP_573468.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_573468.1 381 Q9EQP6 381 100% 0 0

Chromosomal Locations for CCDS 41075.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 100606636 100606643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100606883 100606913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100607064 100607124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100607322 100607366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100611748 100611947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100612052 100612111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100612790 100612857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100613498 100613633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100613829 100613913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100614131 100614203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100614602 100614739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100616900 100616983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100617230 100617253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100617425 100617489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100617719 100617728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100618330 100618387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1146 nt):
ATGTCCACAGTGTTTAAGAAGACTAGCTCCAATGGGAAGTTTTCCATCTACCTGGGGAAACGAGACTTCG
TGGATGATGTGGACACTGTGGAGCCCATTGATGGAGTCGTCCTTGTTGACCCCGAGTACTTAGAAGGTCG
AAAGTTGTTTGTCAGGTTGACCTGTGCTTTTCGCTATGGCCGTGATGACTTGGATGTGATTGGTCTGACA
TTTCGCAAAGATCTCTATGTACAAACCAAGCAAGTGGCTCCAGCTGAACCCACCAGCATCCAGGGCCCCC
TCACAGCCTTACAGGAGCGGCTTCTGCACAAGCTCGGGGTCAATGCCTATCCTTTTACACTTCAGATGGT
TGCTAACCTGCCCTGTTCAGTAACACTGCAGCCTGGGCCTGAAGATTCAGGAAAGCCCTGTGGGGTTGAC
TTTGAAGTGAAGAGTTTCTGTGCAGAAAATCTGGAAGAGAAAATCCCTAAGAGTGATTCTGTGCAGCTGG
TTGTACGGAAAGTGCAGTTTTCAGCCCTGGAACCCGGCCCTGGTCCTTCGGCACAGACCATTCGAAGCTT
CTTTTTGTCATCTCAGCCCCTACAACTGCAGGCCTGGATGGACAGGGAGGTTCATTACCATGGAGAAGCT
ATTTCTGTACATGTTTCTATCAACAACTATACCAACAAGGTCATCAGAAGAATCAAGATTGCAGTTGTCC
AGACCACAGATGTTGTCCTGTATTCACTAGACAAGTACACGAAGACTGTGTTTGTTCAGGAGTTCACAGA
GACAGTAGCTGCTAACTCCAGCTTCTCCCAGACCTTTGCAGTAACCCCACTCCTGGCTGCCAACTGTCAG
AAGCAGGGCCTGGCACTGGATGGCAAACTCAAGCATGAAGACACCAATCTGGCCTCTAGCACAATTCTTC
GACCTGGAATGAACAAGGAGCTTCTGGGGATCCTGGTGTCCTACAAAGTTAGAGTCAACTTGGTGGTGTC
CTATGGGGGCATTCTAGGAGGTCTGCCAGCCAGTGATGTTGGTGTGGAGCTGCCCGTGATCTTGATCCAT
CCAAAGCCATCTCCTGGGGAGAGAGCAGTGGCTACCAGCTCGGAGGACATAGTCATCGAAGAGTTTATGC
AGCACAACAGCCAGACACAGAGCTAG

Translation (381 aa):
MSTVFKKTSSNGKFSIYLGKRDFVDDVDTVEPIDGVVLVDPEYLEGRKLFVRLTCAFRYGRDDLDVIGLT
FRKDLYVQTKQVAPAEPTSIQGPLTALQERLLHKLGVNAYPFTLQMVANLPCSVTLQPGPEDSGKPCGVD
FEVKSFCAENLEEKIPKSDSVQLVVRKVQFSALEPGPGPSAQTIRSFFLSSQPLQLQAWMDREVHYHGEA
ISVHVSINNYTNKVIRRIKIAVVQTTDVVLYSLDKYTKTVFVQEFTETVAANSSFSQTFAVTPLLAANCQ
KQGLALDGKLKHEDTNLASSTILRPGMNKELLGILVSYKVRVNLVVSYGGILGGLPASDVGVELPVILIH
PKPSPGERAVATSSEDIVIEEFMQHNSQTQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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