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Report for CCDS15572.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15572.1 Public Mus musculus 1 Acbd3 23 108 98 CCDS HistoryNCBI Gene:170760Re-query CCDS DB by CCDS ID:15572.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15572.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027780.5 ENSMUSP00000027780.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027780.5Link to Ensembl Protein Viewer:ENSMUSP00000027780.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000027780Re-query CCDS DB by Protein ID:ENSMUSP00000027780
Original member Current member NCBI NM_133225.3 NP_573488.2 Accepted alive Link to Nucleotide Sequence:NM_133225.3Link to Protein Sequence:NP_573488.2Re-query CCDS DB by Nucleotide ID:NM_133225Re-query CCDS DB by Protein ID:NP_573488Link to BLAST:NP_573488.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_573488.2 525 Q8BMP6 525 99.8095% 0 1

Chromosomal Locations for CCDS 15572.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 180726102 180726378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180733166 180733307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180734377 180734517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180736692 180736850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180738463 180738637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180745071 180745257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180746794 180747078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180752159 180752370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1578 nt):
ATGGCGGCGCAGCTGAACGTAGAGCAGCTCGAGGTGTCGCTCGACGGTCTCACGCTGAGCCCGGACTCGG
AGGAGAGGCCCGGCGCGGAGGGGGCCCCGCCGCAGACGCCGCCGTCCTCGGCCCCGGGGAATGGACTGGG
CTCCGGCGCCTCGGGGCAGCAGCGGGAGCCCGGGGAGGCGGCGGCTGAGGGCGCGGCCGAGGAGGCGCGG
CGGATGGAGCAGCACTGGGGCTTTGGCCTGGAGGAGCTTTACGGCCTGGCGCTGCGCTTCTACAAAATAA
AAGATGGCAAAGCCTTTCATCCAACTTATGAAGAAAAACTGAAGTTCGTGGCACTGCATAAGCAAGTTCT
TTTGGGCCCATATAACCCAGACACGTCCCCTGAGGTTGGATTCTTTGATGTGTTGGGGAATGATAGGAGG
AGAGAATGGGCAGCTCTGGGAAACATGTCCAAGGAGGATGCCATGGTAGAGTTTGTGAAGCTTCTAAATA
AGTGTTGTCCTCTCCTCTCGGCATATGTTGCGTCCCACAGAATAGAGAAGGAAGAAGAAGAGAAAAGAAG
AAAGGCGGAGGAGGAGCGAAGGCAGCGTGAAGAGGAAGAACGAGAGCGGCTGCAAAAGGAAGAAGAGAAG
CGGAAGCGAGAGGAGGAAGACCGGCTGAGACGGGAGGAGGAAGAGAGGCGGCGGATAGAGGAAGAGAGGC
TTCGGCTGGAACAGCAAAAGCAGCAGATAATGGCAGCTTTAAACTCGCAGACTGCCGTGCAATTCCAGCA
GTATGCAGCCCAGCAGTATCCAGGGAACTACGAACAACAGCAGATTCTCATCCGCCAGCTGCAGGAGCAG
CACTATCAGCAGTATATGCAGCAGTTATATCAAGTCCAGCTTGCACAACAACAGGCAGCATTACAGAAAC
AGCAAGAAGTAGTGATGGCTGGGGCATCATTGCCTGCATCATCAAAGGTGAACACAGCTGGAGCAAGTGA
TACACTGTCAGTTAATGGACAGGCCAAAACCCACACTGAAAATTCCGAAAAAGTCCTTGAGCCAGAAGCT
GCAGAAGAAGCCTTGGAAAATGGACCAAAAGACTCTCTTCCAGTGATTGCAGCTCCATCCATGTGGACAA
GACCACAAATCAAAGACTTTAAAGAGAAGATTCGGCAGGATGCAGATTCTGTGATTACAGTACGTCGAGG
AGAAGTCGTCACCGTCCGAGTCCCGACTCATGAGGAAGGATCATACCTATTTTGGGAATTTGCCACAGAC
AGTTATGACATTGGGTTTGGGGTTTATTTTGAATGGACAGACTCTCCAAATGCTGCTGTCAGTGTGCATG
TCAGTGAGTCCAGTGACGAGGAGGAGGAGGAGGAAGAAAATGTCACTTGTGAAGAAAAAGCAAAAAAGAA
CGCCAACAAGCCTCTGCTGGATGAGATTGTACCTGTGTACCGGCGGGACTGTCACGAGGAAGTATATGCA
GGCAGCCACCAGTATCCAGGGAGGGGAGTCTATCTCCTCAAGTTTGATAATTCCTACTCTCTGTGGAGGT
CCAAGTCCGTCTACTACAGAGTCTATTATACTAGATAG

Translation (525 aa):
MAAQLNVEQLEVSLDGLTLSPDSEERPGAEGAPPQTPPSSAPGNGLGSGASGQQREPGEAAAEGAAEEAR
RMEQHWGFGLEELYGLALRFYKIKDGKAFHPTYEEKLKFVALHKQVLLGPYNPDTSPEVGFFDVLGNDRR
REWAALGNMSKEDAMVEFVKLLNKCCPLLSAYVASHRIEKEEEEKRRKAEEERRQREEEERERLQKEEEK
RKREEEDRLRREEEERRRIEEERLRLEQQKQQIMAALNSQTAVQFQQYAAQQYPGNYEQQQILIRQLQEQ
HYQQYMQQLYQVQLAQQQAALQKQQEVVMAGASLPASSKVNTAGASDTLSVNGQAKTHTENSEKVLEPEA
AEEALENGPKDSLPVIAAPSMWTRPQIKDFKEKIRQDADSVITVRRGEVVTVRVPTHEEGSYLFWEFATD
SYDIGFGVYFEWTDSPNAAVSVHVSESSDEEEEEEENVTCEEKAKKNANKPLLDEIVPVYRRDCHEEVYA
GSHQYPGRGVYLLKFDNSYSLWRSKSVYYRVYYTR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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