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Report for CCDS20802.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20802.1 Public Mus musculus 7 Vmn1r75 23 108 98 CCDS HistoryNCBI Gene:171241Re-query CCDS DB by CCDS ID:20802.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20802.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057229.1 ENSMUSP00000051510.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057229.1Link to Ensembl Protein Viewer:ENSMUSP00000051510.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000057229Re-query CCDS DB by Protein ID:ENSMUSP00000051510
Original member Current member EBI ENSMUST00000226855.1 ENSMUSP00000154144.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226855.1Link to Ensembl Protein Viewer:ENSMUSP00000154144.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226855Re-query CCDS DB by Protein ID:ENSMUSP00000154144
Original member Current member EBI ENSMUST00000226622.1 ENSMUSP00000154540.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226622.1Link to Ensembl Protein Viewer:ENSMUSP00000154540.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226622Re-query CCDS DB by Protein ID:ENSMUSP00000154540
Original member Current member EBI ENSMUST00000228463.1 ENSMUSP00000154577.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228463.1Link to Ensembl Protein Viewer:ENSMUSP00000154577.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228463Re-query CCDS DB by Protein ID:ENSMUSP00000154577
Original member Current member NCBI NM_134207.1 NP_598968.1 Accepted alive Link to Nucleotide Sequence:NM_134207.1Link to Protein Sequence:NP_598968.1Re-query CCDS DB by Nucleotide ID:NM_134207Re-query CCDS DB by Protein ID:NP_598968Link to BLAST:NP_598968.1

Chromosomal Locations for CCDS 20802.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 11880343 11881260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGAGAATGGCTACCAGGCATTTTGCAATGGGAATTTTTCTCTTCTCCCAGATTACATTGGGAATACTTG
GCAATTCCTCAATACTATTTCATTACATCTTTTTGATACTCACTGGAAAACACTTAATGCCCAAAGATCT
GATTTTAAAGCACTTGACTTTTGCCAATTGCCTGTCTATCATCTCAAGAGGCATTCCACGGGCAATGTCA
GATTGTGGACTTAAGGATTTTCTTGATGATATTGCATGTAAATTGATAGTGTATATATGCCGAATAACAA
GGGGGATGTCCCTTTATGCAATGTGTCTACTCAGTTGTTTCCAAGCAATCACTATCAACCCTAGCAACTG
CAGGTGTTTGACACTCAAGCACAGAGCCACCAAGTACATTGGTCATTGCTGCTCAGTCAGTTGGCTTCTG
CACCTGTTTCTAAACATCTTGACTCCAGCAAGAGTGTCAGGCCCCAGTTACAAGAAAAATGTGACTAACA
TGAGTTATGGGTACTGCTCATGGGTTGCTTCAGGCAATGTGGCAACTGCACTATATATGTTATTACTGTG
CTTCTCTGATGCTCTGTGTCTGACTCTCATGGCCTGCTCAAGTGTCTCTATGGTGAGTGTCCTCTACAGA
CATAAAAGACAAGTCAAACATATCCACAGTGCTCAGCATGCTCTAAAAGACTCTCCTGAAGACAGAGCCA
CACAAACTATCCTCATCCTGATGTGCATATTTGTCCTCTCTTACTCATTCTCCTCCATAGTGGTCATCTT
GACAACCTACTCCAAATATCCAATGCTATGGGGGGTAAGTGTACTTACATTTATAGAAATATGCTTTCCC
ATATTTTGTCCCTTTGTTATCATTAGCAACATGAACTCTAGTTCCAGCCCATTTTTACCCTGCTTTGGTA
AGCGGTAA

Translation (305 aa):
MRMATRHFAMGIFLFSQITLGILGNSSILFHYIFLILTGKHLMPKDLILKHLTFANCLSIISRGIPRAMS
DCGLKDFLDDIACKLIVYICRITRGMSLYAMCLLSCFQAITINPSNCRCLTLKHRATKYIGHCCSVSWLL
HLFLNILTPARVSGPSYKKNVTNMSYGYCSWVASGNVATALYMLLLCFSDALCLTLMACSSVSMVSVLYR
HKRQVKHIHSAQHALKDSPEDRATQTILILMCIFVLSYSFSSIVVILTTYSKYPMLWGVSVLTFIEICFP
IFCPFVIISNMNSSSSPFLPCFGKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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