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Report for CCDS26319.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26319.1 Public Mus musculus 13 Vmn1r201 23 108 98 CCDS HistoryNCBI Gene:171255Re-query CCDS DB by CCDS ID:26319.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26319.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091730.1 ENSMUSP00000089324.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091730.1Link to Ensembl Protein Viewer:ENSMUSP00000089324.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000091730Re-query CCDS DB by Protein ID:ENSMUSP00000089324
Original member Current member EBI ENSMUST00000226330.1 ENSMUSP00000154490.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226330.1Link to Ensembl Protein Viewer:ENSMUSP00000154490.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226330Re-query CCDS DB by Protein ID:ENSMUSP00000154490
Original member Current member EBI ENSMUST00000226965.1 ENSMUSP00000154790.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226965.1Link to Ensembl Protein Viewer:ENSMUSP00000154790.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226965Re-query CCDS DB by Protein ID:ENSMUSP00000154790
Original member Current member NCBI NM_134221.1 NP_598982.1 Accepted alive Link to Nucleotide Sequence:NM_134221.1Link to Protein Sequence:NP_598982.1Re-query CCDS DB by Nucleotide ID:NM_134221Re-query CCDS DB by Protein ID:NP_598982Link to BLAST:NP_598982.1

Chromosomal Locations for CCDS 26319.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 22474618 22475520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGAACTGGAATAACATTACACTGACAATTGTCTTCCTTTCTCTAGCTGGACCTGGAATTGTAGGAAATA
TTCTAGTGTTTGTGAGATATGTGCACAATTCTGCCTTGGGGACTGAGAAAAAGCCTCTCGACCTCATTCT
CATCCACTTGGCATTTTCTAATCTGATCATTATTTGTAGCACAGGGATCAGAGATTTAGCTACAGTGTTT
TCTTTCAGAAACTTCCTAGGAGATATTGGCTGTAAAGCTGCAGTTTATCTGGCAAGGATGGCACGGGGCC
TTTCCATCTGCACCACCTGTCTCCTCAGTGTGCTCCAGGCTGTCACCATCAGTCCCAGGACAACCATTTG
GACAAAGCTCAAACCACAGACATCTTTCCAAGTTCTTCCATTTCTCCTCCTTTTCTGGATTGTTAATGTT
CTCATAAGCTCCAACTTGCTCTCCTACATCAAAGCAGGTAGTGGCTTGAACAGGTCTGTAGTTGCAACGT
ACATTGGCCACTGCTATATGCTCCAATCAAGACACATCATCAAGTGGTTCTTCCTCTCTCTCATGACTCT
TCGTGATGTCATCTTTCAGAGTCTCATGGGCTGGAGCAGTGGGTCCATGGCTCTCCATCTGTATAAGCAC
CACAAACGTGTCCTCTACCTTCACAGCTCCAGGTCTGCAAATAACTCCCCTCCTGAAATCAGAGCTACAT
GGAGTGTTCTCATTCTTATGGCCTGCTTCCTTTTCTTCTATTGGGTAGATTTTATTATCTCCTTCTACAC
AGGTTTCACGGTGGCACATGATTCTATTTTACTAAATATTAAAACATTTTTAGAACTTGGTTATGCTAGC
TTCAGCCCCTATGTTCTGATCAGCAGAGATGTCCATGTTCCTAATGTCTTACGTGCTCACTAA

Translation (300 aa):
MNWNNITLTIVFLSLAGPGIVGNILVFVRYVHNSALGTEKKPLDLILIHLAFSNLIIICSTGIRDLATVF
SFRNFLGDIGCKAAVYLARMARGLSICTTCLLSVLQAVTISPRTTIWTKLKPQTSFQVLPFLLLFWIVNV
LISSNLLSYIKAGSGLNRSVVATYIGHCYMLQSRHIIKWFFLSLMTLRDVIFQSLMGWSSGSMALHLYKH
HKRVLYLHSSRSANNSPPEIRATWSVLILMACFLFFYWVDFIISFYTGFTVAHDSILLNIKTFLELGYAS
FSPYVLISRDVHVPNVLRAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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