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Report for CCDS57493.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57493.1 Public Mus musculus 7 Vmn1r82 23 108 98 CCDS HistoryNCBI Gene:171268Re-query CCDS DB by CCDS ID:57493.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 57493.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072801.4 ENSMUSP00000072580.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072801.4Link to Ensembl Protein Viewer:ENSMUSP00000072580.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000072801Re-query CCDS DB by Protein ID:ENSMUSP00000072580
Original member Current member NCBI NM_134234.1 NP_598995.1 Accepted alive Link to Nucleotide Sequence:NM_134234.1Link to Protein Sequence:NP_598995.1Re-query CCDS DB by Nucleotide ID:NM_134234Re-query CCDS DB by Protein ID:NP_598995Link to BLAST:NP_598995.1

Chromosomal Locations for CCDS 57493.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 12304805 12305719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (915 nt):
ATGAAACCAGAGAACATGGTAATGGGTATAGTCTTCATCCTGCAGACTACTGTAGGAATCCTGGTTAATT
CCTCAGTTCTGCTTCATTACTTAGTCCCAGGATTTACTGGGAAAGGTTTGAAGCTCAAAACCCTAATTGT
AAAGCACTTAACTCTGGCCAACTCCTTGTCTATTATCTCTAGAGGAATTCCACAGATAATGGCAGAATTT
GGGATGAAATATTTTCTGGATGACATTGGGTGTAAACTTGTACTTTACCTTTATAGAGTATCCCGGGGGG
TTTCACTATATACAACATGCCTTTTGAGTTGTTTCCAAGCGGCCATAATCAGCTCAAGCACCACCAAATG
GATGAAGTTTAAACACAAAGCCATCAAGTACATGGGTCCTTCCTGCTCACTCAGTTGGCCTATGAATCTG
CTTCTGAATGTCATGATACTTGTGACAGTGACAAGCTCTAGCAACAGAAGGAATGCCACTAAGAAACTGA
CCTATGGGTACTGCTCAGCATCTGTTTCTGGCACTATTGCAACTCCCTTGTATATGCTCTTGCTCAGCTT
CACTGATGTTCTGTGTTTGAGTCTCATGTCCTGGGCCAGTGTCTTCATGCTGAGCATCCTCCACAGGCAC
AAGAAGCAGGTCCAGTACATCCATGGTGTCCAACATTTCCTGAGAGTCTCTCCTGAGGCCAGGGCCACCC
AAACCATACTAATCCTTGCATGCACTTTTGTTACCTTCTACTCTATCTCTTCCATCATGGTTCTATATTC
AGCCTTATTTGGTAATCCAGGATTGTGGGTTATCAACATCATCTCAGTTTTAGAAACCTGTTACCCTATA
TTTTGCTCCTTTGTGCTCATTAGTAATAACAGCTCTGCCTCTAGGCTCTATCTTCACTGTTGGTGGAAAC
GTTAA

Translation (304 aa):
MKPENMVMGIVFILQTTVGILVNSSVLLHYLVPGFTGKGLKLKTLIVKHLTLANSLSIISRGIPQIMAEF
GMKYFLDDIGCKLVLYLYRVSRGVSLYTTCLLSCFQAAIISSSTTKWMKFKHKAIKYMGPSCSLSWPMNL
LLNVMILVTVTSSSNRRNATKKLTYGYCSASVSGTIATPLYMLLLSFTDVLCLSLMSWASVFMLSILHRH
KKQVQYIHGVQHFLRVSPEARATQTILILACTFVTFYSISSIMVLYSALFGNPGLWVINIISVLETCYPI
FCSFVLISNNSSASRLYLHCWWKR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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