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Report for CCDS4652.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4652.1 Public Homo sapiens 6 GPX5 24 110 108 CCDS HistoryNCBI Gene:2880Re-query CCDS DB by CCDS ID:4652.1Re-query CCDS DB by GeneID:2880See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4652.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000412168.7 ENSP00000392398.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000412168.7Link to Ensembl Protein Viewer:ENSP00000392398.2Re-query CCDS DB by Nucleotide ID:ENST00000412168Re-query CCDS DB by Protein ID:ENSP00000392398
Original member Current member NCBI NM_001509.3 NP_001500.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001509.3Link to Protein Sequence:NP_001500.1Re-query CCDS DB by Nucleotide ID:NM_001509Re-query CCDS DB by Protein ID:NP_001500Link to BLAST:NP_001500.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001500.1 221 O75715-1 221 100% 0 0

Chromosomal Locations for CCDS 4652.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 28526014 28526100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28529451 28529604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28531778 28531895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28532321 28532420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28533961 28534167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (666 nt):
ATGACTACACAGTTAAGGGTCGTCCATCTGCTTCCCCTTCTCCTAGCCTGCTTTGTGCAAACAAGTCCCA
AGCAGGAGAAGATGAAGATGGATTGCCACAAAGACGAGAAAGGCACCATCTATGACTATGAGGCCATCGC
ACTTAATAAGAATGAATATGTTTCCTTCAAGCAGTATGTGGGCAAGCACATCCTCTTCGTCAACGTGGCC
ACCTACTGTGGTCTGACAGCGCAATATCCTGAACTAAATGCACTCCAGGAGGAGCTGAAGCCCTATGGTC
TAGTTGTGTTGGGCTTTCCCTGCAACCAATTTGGAAAGCAAGAACCAGGAGATAACAAAGAGATTCTTCC
TGGGCTCAAGTATGTCCGTCCAGGGGGAGGATTTGTACCTAGTTTCCAGCTTTTTGAGAAAGGGGATGTG
AATGGTGAAAAAGAACAGAAAGTCTTCAGTTTCTTGAAGCACTCCTGTCCTCATCCCTCTGAGATTTTGG
GCACATTCAAATCTATATCCTGGGACCCTGTAAAGGTCCATGACATCCGTTGGAACTTTGAAAAGTTCCT
GGTGGGGCCTGATGGAATCCCTGTCATGCGCTGGTCCCACCGGGCTACGGTCAGCTCAGTCAAGACAGAC
ATCCTGGCGTACTTGAAGCAATTCAAAACCAAATAG

Translation (221 aa):
MTTQLRVVHLLPLLLACFVQTSPKQEKMKMDCHKDEKGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVA
TYCGLTAQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLFEKGDV
NGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTD
ILAYLKQFKTK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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