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Report for CCDS52889.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52889.1 Public Mus musculus 9 U2surp 23 108 98 CCDS HistoryNCBI Gene:67958Re-query CCDS DB by CCDS ID:52889.1Re-query CCDS DB by GeneID:67958See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52889.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079659.11 ENSMUSP00000078602.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079659.11Link to Ensembl Protein Viewer:ENSMUSP00000078602.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000079659Re-query CCDS DB by Protein ID:ENSMUSP00000078602
Original member Current member NCBI NM_001114977.1 NP_001108449.1 Accepted alive Link to Nucleotide Sequence:NM_001114977.1Link to Protein Sequence:NP_001108449.1Re-query CCDS DB by Nucleotide ID:NM_001114977Re-query CCDS DB by Protein ID:NP_001108449Link to BLAST:NP_001108449.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001108449.1 1029 Q6NV83-1 1029 100% 0 0

Chromosomal Locations for CCDS 52889.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 95461405 95461543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95462703 95462879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95464363 95464481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95466546 95466656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95472043 95472202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95474421 95474487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95475202 95475297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95476107 95476263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95477400 95477522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95479267 95479354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95481653 95481732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95482092 95482254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95484170 95484333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95484408 95484474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95485561 95485665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95488746 95488789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95489700 95489911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95490090 95490255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95491091 95491173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95491265 95491300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95491382 95491476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95492324 95492391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95493098 95493231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95493703 95493817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95495835 95495933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95500688 95500819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95502540 95502584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95511817 95511861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3090 nt):
ATGGCCGACAAAACGCCAGGCGGATCTCAGAAGGCCAGTTCAAAGAACCGATCATCAGATGTTCATTCAT
CTGGATCTTCAGATGCACATATGGATGCATCTGGACCCTCAGATAGTGATATGCCAAGTCGAACACGACC
TAAAAGCCCAAGAAAACACAATTATAGGAATGAGAGTTCCCGCGAAAGCCTTTGCGATTCTCCTCATCAG
AATCTCTCAAGACCTCTTCTAGAAAACAAGCTTAAAGCATTCAGTATTGGAAAAATGAGCACAGCAAAGC
GAACCCTAAGTAAGAAGGAACAAGAGGAACTGAAGAAAAAGGAGGATGAGAAGGCAGCGGCCGAAATTTA
TGAGGAATTTCTTGCTGCTTTTGAAGGAAGTGATGGTAATAAAGTGAAAACGTTTGTTCGAGGCGGGGTT
GTTAATGCAGCTAAAGATGAACATGAAACAGATGAAAAAAGAGGTAAAATCTATAAACCATCTTCAAGGT
TTGCAGATCAAAAAAATCCTCCAAATCAGTCATCCAATGAAAGGCCGCCATCTCTTCTTGTGATAGAGAC
GAAAAAACCCCCACTGAAAAAAGGGGAGAAGGAAAAGAAAAAAAGCAATTTGGAACTTTTCAAAGAAGAA
CTAAAACAAATTCAGGAAGAACGTGATGAGAGACATAAAACAAAAGGCAGGTTAAGTCGGTTTGAGCCTC
CTCAGTCAGACTCTGATGGTCAGCGACGTTCTATGGATGTGCCTTCAAGAAGAAATAGATCGTCTGGTGT
TCTTGATGATTATGCACCTGGCTCACATGATGTAGGAGATCCCAGCACTACAAATTTATACCTTGGAAAC
ATTAATCCACAGATGAATGAAGAAATGCTGTGCCAAGAATTTGGAAGATTTGGACCATTAGCTAGTGTAA
AAATTATGTGGCCTAGAACTGATGAAGAAAGAGCACGAGAAAGAAACTGTGGCTTTGTGGCTTTTATGAA
CAGAAGAGATGCTGAAAGAGCTCTAAAGAACTTAAACGGAAAAATGATTATGTCTTTTGAAATGAAGTTA
GGTTGGGGTAAAGCTGTGCCTATTCCTCCACATCCAATATACATTCCGCCTTCTATGATGGAACACACGC
TCCCCCCACCTCCATCCGGACTGCCTTTTAATGCGCAGCCTAGAGAGCGATTAAAAAACCCCAATGCTCC
CATGTTACCACCACCTAAAAACAAGGAGGATTTCGAGAAGACTCTGTCGCAAGCCATAGTCAAAGTGGTT
ATCCCAACAGAAAGGAATTTACTCGCCCTGATACACCGAATGATAGAATTTGTTGTACGTGAAGGGCCAA
TGTTTGAAGCTATGATTATGAACAGAGAAATCAACAATCCTATGTTCAGGTTCTTATTTGAAAACCAGAC
ACCAGCCCATGTTTACTACAGGTGGAAGCTTTATTCTATTCTGCAGGGAGATTCTCCAACGAAATGGCGG
ACAGAAGATTTTCGAATGTTCAAAAATGGATCTTTTTGGAGGCCACCACCTTTAAATCCATACCTTCATG
GGATGTCAGAGGAGCAAGAGACAGAAGCGTTTGTAGAAGAACCTAGTAAGAAGGGAGCACTCAAGGAAGA
ACAGCGGGATAAGTTAGAAGAAATCTTGCGAGGATTAACTCCAAGGAAAAATGATATTGGAGATGCCATG
GTTTTCTGTCTTAATAATGCTGAAGCTGCTGAAGAAATAGTGGATTGCATTACTGAGTCGCTGTCCATCT
TAAAGACACCTCTTCCCAAGAAGATTGCCAGATTATATTTGGTTTCTGATGTTTTATACAACTCTTCAGC
CAAAGTTGCCAATGCTTCATATTACAGGAAATTTTTTGAAACAAAGCTATGCCAGATATTTTCAGACCTC
AATGCTACTTATCGTACAATTCAAGGCCATTTACAATCTGAAAACTTTAAGCAACGGGTAATGACCTGCT
TCAGAGCATGGGAAGATTGGGCAATTTATCCAGAACCATTTTTGATCAAACTTCAGAATATTTTCTTAGG
ACTTGTAAATATCATTGAAGAAAAGGAAACAGAGGATGTGCCGGATGATCTTGACGGTGCTCCCATCGAG
GAGGAGCTTGACGGGGCGCCTCTGGAGGATGTGGATGGGATTCCCATCGATGCCACTCCCATCGATGACC
TGGATGGGGTCCCTATAAAGAGTCTTGATGATGATCTGGATGGAGTGCCTTTGGATGCAACTGAAGACTC
AAAGAAGAATGAACCCATATTTAAAGTTGCCCCATCAAAATGGGAGGCTGTAGATGAATCTGAATTGGAA
GCACAAGCGGTAACGACTTCTAAGTGGGAGTTATTTGACCAGCATGAAGAGTCAGAAGAAGAGGAAAACC
AAAATCAGGAAGAAGAGAGTGAAGATGAAGAAGACACTCAGAGCTCCAAGTCTGAAGAGCATCATTTGTA
CTCTAACCCAGTCAGAGAAGAGGCGACTGAGTCTAAGTTCTCTAAGTACTCCGAAATGAGTGAAGAAAAG
CGAGCTAAGCTTCGTGAAATTGAGCTAAAAGTTATGAAGTTTCAAGATGAATTGGAATCTGGAAAGAGAC
CTAAAAAACCAGGCCAAAGCTTCCAGGAACAAGTAGAGCACTACAGGGATAAACTGCTGCAGCGGGAGAA
GGAAAAAGAATTAGAAAGAGAACGAGAAAGAGACAAAAAAGATAAAGAAAAATTGGAATCTCGATCCAAA
GACAAGAAGGAAAAGGATGAATGTACTCCAACAAGAAAAGAAAGGAAGAGACGACATAGTACCTCCCCCA
GCCCTTCTCGAAGTAGCAGTGGTCGGCGTGTGAAATCCCCATCACCCAAATCAGAGCGCTCTGAACGGTC
AGAAAGGTCTCACAAAGAAAGTTCTCGGTCCAGATCCTCTCACAAAGACTCTCCTAGAGACGCTAGCAAA
AAAGCCAAAAGGTCGCCGTCTGGTTCAAGGACACCTAAAAGGTCTAGGCGCTCTCGCTCTAGGTCCCCTA
AGAAATCAGGGAAGAAATCCAGATCTCAGTCCCGGTCTCCACACAGGTCTCATAAAAAGTCAAAGAAAAA
CAAACACTGA

Translation (1029 aa):
MADKTPGGSQKASSKNRSSDVHSSGSSDAHMDASGPSDSDMPSRTRPKSPRKHNYRNESSRESLCDSPHQ
NLSRPLLENKLKAFSIGKMSTAKRTLSKKEQEELKKKEDEKAAAEIYEEFLAAFEGSDGNKVKTFVRGGV
VNAAKDEHETDEKRGKIYKPSSRFADQKNPPNQSSNERPPSLLVIETKKPPLKKGEKEKKKSNLELFKEE
LKQIQEERDERHKTKGRLSRFEPPQSDSDGQRRSMDVPSRRNRSSGVLDDYAPGSHDVGDPSTTNLYLGN
INPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKL
GWGKAVPIPPHPIYIPPSMMEHTLPPPPSGLPFNAQPRERLKNPNAPMLPPPKNKEDFEKTLSQAIVKVV
IPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKLYSILQGDSPTKWR
TEDFRMFKNGSFWRPPPLNPYLHGMSEEQETEAFVEEPSKKGALKEEQRDKLEEILRGLTPRKNDIGDAM
VFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRKFFETKLCQIFSDL
NATYRTIQGHLQSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFLGLVNIIEEKETEDVPDDLDGAPIE
EELDGAPLEDVDGIPIDATPIDDLDGVPIKSLDDDLDGVPLDATEDSKKNEPIFKVAPSKWEAVDESELE
AQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPVREEATESKFSKYSEMSEEK
RAKLREIELKVMKFQDELESGKRPKKPGQSFQEQVEHYRDKLLQREKEKELERERERDKKDKEKLESRSK
DKKEKDECTPTRKERKRRHSTSPSPSRSSSGRRVKSPSPKSERSERSERSHKESSRSRSSHKDSPRDASK
KAKRSPSGSRTPKRSRRSRSRSPKKSGKKSRSQSRSPHRSHKKSKKNKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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