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Report for CCDS24102.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24102.1 Public Mus musculus 10 Pah 23 108 98 CCDS HistoryNCBI Gene:18478Re-query CCDS DB by CCDS ID:24102.1Re-query CCDS DB by GeneID:18478See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24102.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020241.16 ENSMUSP00000020241.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020241.16Link to Ensembl Protein Viewer:ENSMUSP00000020241.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000020241Re-query CCDS DB by Protein ID:ENSMUSP00000020241
Original member Current member NCBI NM_008777.3 NP_032803.2 Accepted alive Link to Nucleotide Sequence:NM_008777.3Link to Protein Sequence:NP_032803.2Re-query CCDS DB by Nucleotide ID:NM_008777Re-query CCDS DB by Protein ID:NP_032803Link to BLAST:NP_032803.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032803.2 453 P16331 453 100% 0 0

Chromosomal Locations for CCDS 24102.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 87522017 87522076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 87528299 87528406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 87538142 87538325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 87554346 87554434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 87563402 87563469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 87567274 87567470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 87570208 87570343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 87571226 87571295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 87576157 87576213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 87578260 87578355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 87578853 87578986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 87581848 87581963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 87583532 87583578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1362 nt):
ATGGCAGCTGTTGTCCTGGAGAACGGAGTCCTGAGCAGAAAACTCTCAGACTTTGGGCAGGAAACAAGTT
ACATCGAAGACAACTCCAATCAAAATGGTGCTGTATCTCTGATATTCTCACTCAAAGAGGAAGTTGGTGC
CCTGGCCAAGGTCCTGCGCTTATTTGAGGAGAATGAGATCAACCTGACACACATTGAATCCAGACCTTCC
CGTTTAAACAAAGATGAGTATGAGTTTTTCACCTATCTGGATAAGCGTAGCAAGCCCGTCCTGGGCAGCA
TCATCAAGAGCCTGAGGAACGACATTGGTGCCACTGTCCATGAGCTTTCCCGAGACAAGGAAAAGAACAC
AGTGCCCTGGTTCCCAAGGACCATTCAGGAGCTGGACAGATTCGCCAATCAGATTCTCAGCTATGGAGCC
GAACTGGATGCAGACCACCCAGGCTTTAAAGATCCTGTGTACCGGGCGAGACGAAAGCAGTTTGCTGACA
TTGCCTACAACTACCGCCATGGGCAGCCCATTCCTCGGGTGGAATACACAGAGGAGGAGAGGAAGACCTG
GGGAACGGTGTTCAGGACTCTGAAGGCCTTGTATAAAACACATGCCTGCTACGAGCACAACCACATCTTC
CCTCTTCTGGAAAAGTACTGCGGTTTCCGTGAAGACAACATCCCGCAGCTGGAAGATGTTTCTCAGTTTC
TGCAGACTTGTACTGGTTTCCGCCTCCGTCCTGTTGCTGGCTTACTGTCGTCTCGAGATTTCTTGGGTGG
CCTGGCCTTCCGAGTCTTCCACTGCACACAGTACATTAGGCATGGATCTAAGCCCATGTACACACCTGAA
CCTGATATCTGTCATGAACTCTTGGGACATGTGCCCTTGTTTTCAGATAGAAGCTTTGCCCAGTTTTCTC
AGGAAATTGGGCTTGCATCGCTGGGGGCACCTGATGAGTACATTGAGAAACTGGCCACAATTTACTGGTT
TACTGTGGAGTTTGGGCTTTGCAAGGAAGGAGATTCTATAAAGGCATATGGTGCTGGGCTCTTGTCATCC
TTTGGAGAATTACAGTACTGTTTATCAGACAAGCCAAAGCTCCTGCCCCTGGAGCTAGAGAAGACAGCCT
GCCAGGAGTATACTGTCACAGAGTTCCAGCCTCTGTACTATGTGGCCGAGAGTTTCAATGATGCCAAGGA
GAAAGTGAGGACTTTTGCTGCCACAATCCCCCGGCCCTTCTCCGTTCGCTATGACCCCTACACTCAAAGG
GTTGAGGTCCTGGACAATACTCAGCAGTTGAAGATTTTAGCTGACTCCATTAATAGTGAGGTTGGAATCC
TTTGCCATGCCCTGCAGAAAATAAAGTCATGA

Translation (453 aa):
MAAVVLENGVLSRKLSDFGQETSYIEDNSNQNGAVSLIFSLKEEVGALAKVLRLFEENEINLTHIESRPS
RLNKDEYEFFTYLDKRSKPVLGSIIKSLRNDIGATVHELSRDKEKNTVPWFPRTIQELDRFANQILSYGA
ELDADHPGFKDPVYRARRKQFADIAYNYRHGQPIPRVEYTEEERKTWGTVFRTLKALYKTHACYEHNHIF
PLLEKYCGFREDNIPQLEDVSQFLQTCTGFRLRPVAGLLSSRDFLGGLAFRVFHCTQYIRHGSKPMYTPE
PDICHELLGHVPLFSDRSFAQFSQEIGLASLGAPDEYIEKLATIYWFTVEFGLCKEGDSIKAYGAGLLSS
FGELQYCLSDKPKLLPLELEKTACQEYTVTEFQPLYYVAESFNDAKEKVRTFAATIPRPFSVRYDPYTQR
VEVLDNTQQLKILADSINSEVGILCHALQKIKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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