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Report for CCDS11298.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11298.1 Public Homo sapiens 17 GAS2L2 24 110 108 CCDS HistoryNCBI Gene:246176Re-query CCDS DB by CCDS ID:11298.1Re-query CCDS DB by GeneID:246176See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11298.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000604641.6 ENSP00000474529.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000604641.6Link to Ensembl Protein Viewer:ENSP00000474529.2Re-query CCDS DB by Nucleotide ID:ENST00000604641Re-query CCDS DB by Protein ID:ENSP00000474529
Original member Current member NCBI NM_139285.4 NP_644814.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_139285.4Link to Protein Sequence:NP_644814.1Re-query CCDS DB by Nucleotide ID:NM_139285Re-query CCDS DB by Protein ID:NP_644814Link to BLAST:NP_644814.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_644814.1 880 Q8NHY3-1 880 100% 0 0

Chromosomal Locations for CCDS 11298.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35744854 35746411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35747016 35747268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35747849 35747945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35749110 35749217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35750077 35750318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35752466 35752850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2643 nt):
ATGTCCCAGCCTGCGGGAGGCAGGAGGAAGCCCAGGACCCTAGGGCCGCCTGTGTGCAGTATCCGGCCTT
TCAAGTCGAGTGAGCAGTACCTGGAGGCCATGAAGGAAGACCTGGCTGAGTGGCTTCGCGACCTCTATGG
GCTGGACATCGACGCAGCCAACTTCCTGCAGGTGCTGGAAACGGGCCTGGTGCTGTGCCAACACGCCAAC
GTTGTCACTGACGCTGCCCTGGCCTTCCTGGCTGAGGCACCTGCCCAAGCCCAGAAGATTCCCATGCCCC
GGGTCGGGGTCTCCTGCAATGGGGCCGCCCAGCCAGGTACCTTCCAGGCCAGGGACAATGTCTCTAACTT
CATCCAGTGGTGTCGAAAGGAGATGGGCATCCAAGAGGTGCTGATGTTCGAGACGGAGGACTTGGTGCTG
CGCAAGAACGTGAAGAACGTGGTGCTGTGTTTGCTGGAGCTGGGCCGCCGGGCGTGGCGCTTTGGTGTTG
CGGCGCCCACACTCGTGCAGCTGGAGGAGGAGATCGAGGAGGAGGTGCGGCGGGAGCTGGCCCTGCCCCC
GCCCGACCCCTCGCCGCCAGCGCCCCCCAGGCGCCAGCCCTGCCACTTCCGCAACCTGGACCAGATGGTG
CAGAGCCTTGTGAGCCACTGCACGTGCCCAGTGCAGTTCTCCATGGTCAAAGTGTCTGAGGGGAAGTACC
GTGTGGGTGACTCCAACACCCTCATCTTCATCCGGATCCTCCGGAACCATGTGATGGTACGTGTAGGGGG
CGGCTGGGACACACTGGGCCATTACCTGGACAAACATGACCCCTGCCGCTGCACATCCCTCTCACACAAG
CCAGGCAGCTTCCTGAAGCCCCCGGCCCCACCAGTGCAGCATGAAGTAAGGGTACAGGATGGACCCTCAC
AGACCCAGCCTACAATGACCATCAGCCGCTCACAGAGCCCACCACCCCCTGTGGACTGGAAGACATATAC
CTCTTCAGACCGAAGGCTGAGGCCCCCCACCCCATCCTCCCCCAGACCCCGCAGGGAACGGGGAGCAGGG
ACGGGGGCCTCCAGAGAGATGGCACCATTCCTGAGGTGCCAGGAGAGGTCTCTCATCCCATCTTGGAGGC
AGCCGACAGCTGGGGACAGCCCACCCAGCCCCCAGTCCTCATCTACCCAAAAAGGCCGAGACCCACAGTG
TACCTCGTCAGGAAAGAGGGAGGAGAGATACCCCCCTGAACTCCCCAGGGGAAGGATTCCCACATCTTGG
GTTCATGAAGAAACAGACAGCTGGGGAACCGACGCCGGGAACCCCACCCCACAAAGACTCCGAGCCATTG
AGGCCACCACCAAAGGGATATCAGCAAGAGGACCATCTCCCCTGCCTCGTTCCTTTGGCCCAGCCGAGTG
CCTGGGCCTCAGGCTGCCACTCCGGGATGAGGCCAAGGGTGCGTTCTTCCAGTTCAGGGAGCCAGAGTCT
GTCCGTTCTCCAACCCCTGTCCAAGGCCTAACCAAGATCCCCATCCGGCTGCCCCCTGCTCGCCCCCCAA
CACCAGGAAGGAGCTTTCCTGGTGCTACAAGTGGAAGTCCCAGGACAGAACTTGGGAGAGACCCCATCCC
ACTAAGGGCCGTCACTGTGGACCTGGCTGGGTCCACGCATGGGGACTGCTCTGTGGAAGTGAGGCAGGAG
GACCAGCAGCTGGACATCCAGGTCATGGCAGAGGCCAGAGAGTCCTGGGACCTGGGCCTACAGGAGCAGG
AGGGGCGGTACACACCTCTGCCCTTGGGCGGGAACAAGGAGCAAGCCATCTACTGTAGCCTTGAAGAGGA
GATTTTGGGCAACATGAAGCTGCTAGAAGTCAGGAGTGCCTGTCCGCAGGGCACAAGGTCTGGGGTCATC
CCTCGCAGTGGGGTCTACATCCCCAGGCTGGCTGGGCAGTGGCCTGAGCCTGGGGGTCCTTATGACAAAG
CCATCCAAGAACTGGCTCAGGGGTCCCCATCCCTCCTTAAAGTGGACCTGGAAGCCTGGAAGGCAGCCCC
GACTGGCTCCCCTAAGCCAGCTGTTACCCCAGGACCGGGAAGCCTCAAAGGGAAGTTGGGAGCCAGACAG
AGTGGGCCCAGGACAAAGGCAAGCCTGAGTGCCAAGGGCACCCACATGAGGAAGGTCCCACCTCAGGGAG
GGCAGGACTGCTCGGCTTCTACTGTGTCTGCCAGCCCGGAGGCCCCCACACCTTCGCCCTTGGACCCCAA
CTCTGACAAAGCCAAGGCATGTCTGAGCAAGGGCAGGAGAACTCTCCGGAAGCCCAAGAGGGTCCCGTCC
ATCTACAAGCTGAAGCTGAGACCCAGGATTCGGCCCCGGAGAGACCACAGGCCTGAGAAGCAGCCTTCAC
GAATCCCCAGGCCACTGGCCTATGTCTTCCTGGGTCCAGCCAGGCAGCCCCCCAAGGACAGGCTGTTGAG
AGCTGTGCTGGGCAGCAAGGGAGGGGAGGCATCCCGGGTGGATGGAGCTTCAGTAGGTGAGGAGGAGGAG
GAAGGAAAGGAGGAGAAAGAGCCAGCCGCTCCATTGGAGAGCAGCCCCCAACCTCCAGAGGGCCTGCAAC
CTCACTGGCTTAATCAAGCTCCACTTCCACCTGAGGAGGAGTCCTGGGTCTGA

Translation (880 aa):
MSQPAGGRRKPRTLGPPVCSIRPFKSSEQYLEAMKEDLAEWLRDLYGLDIDAANFLQVLETGLVLCQHAN
VVTDAALAFLAEAPAQAQKIPMPRVGVSCNGAAQPGTFQARDNVSNFIQWCRKEMGIQEVLMFETEDLVL
RKNVKNVVLCLLELGRRAWRFGVAAPTLVQLEEEIEEEVRRELALPPPDPSPPAPPRRQPCHFRNLDQMV
QSLVSHCTCPVQFSMVKVSEGKYRVGDSNTLIFIRILRNHVMVRVGGGWDTLGHYLDKHDPCRCTSLSHK
PGSFLKPPAPPVQHEVRVQDGPSQTQPTMTISRSQSPPPPVDWKTYTSSDRRLRPPTPSSPRPRRERGAG
TGASREMAPFLRCQERSLIPSWRQPTAGDSPPSPQSSSTQKGRDPQCTSSGKREERYPPELPRGRIPTSW
VHEETDSWGTDAGNPTPQRLRAIEATTKGISARGPSPLPRSFGPAECLGLRLPLRDEAKGAFFQFREPES
VRSPTPVQGLTKIPIRLPPARPPTPGRSFPGATSGSPRTELGRDPIPLRAVTVDLAGSTHGDCSVEVRQE
DQQLDIQVMAEARESWDLGLQEQEGRYTPLPLGGNKEQAIYCSLEEEILGNMKLLEVRSACPQGTRSGVI
PRSGVYIPRLAGQWPEPGGPYDKAIQELAQGSPSLLKVDLEAWKAAPTGSPKPAVTPGPGSLKGKLGARQ
SGPRTKASLSAKGTHMRKVPPQGGQDCSASTVSASPEAPTPSPLDPNSDKAKACLSKGRRTLRKPKRVPS
IYKLKLRPRIRPRRDHRPEKQPSRIPRPLAYVFLGPARQPPKDRLLRAVLGSKGGEASRVDGASVGEEEE
EGKEEKEPAAPLESSPQPPEGLQPHWLNQAPLPPEEESWV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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