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Report for CCDS35940.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35940.2 Public Mus musculus 10 Gm5134 23 108 98 CCDS HistoryNCBI Gene:333669Re-query CCDS DB by CCDS ID:35940.2Re-query CCDS DB by GeneID:333669See the combined annotation on chromosome 10 in Sequence Viewer

Public Note for CCDS 35940.1
The coding region has been updated to represent an alternative splice pattern, resulting in an extended N-terminus and a longer and distinct C-terminus, both of which are better supported by available transcript and homology data. The update completes the predicted sodium:solute symporter family (SSF) domain, which was previously truncated.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 35940.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099577.3 ENSMUSP00000097172.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099577.3Link to Ensembl Protein Viewer:ENSMUSP00000097172.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000099577Re-query CCDS DB by Protein ID:ENSMUSP00000097172
Original member Current member NCBI NM_198635.3 NP_941037.2 Accepted alive Link to Nucleotide Sequence:NM_198635.3Link to Protein Sequence:NP_941037.2Re-query CCDS DB by Nucleotide ID:NM_198635Re-query CCDS DB by Protein ID:NP_941037Link to BLAST:NP_941037.2

Chromosomal Locations for CCDS 35940.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 75954572 75954700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75964416 75964520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75966351 75966410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75974181 75974285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75976312 75976417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75978309 75978389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75985920 75986140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75992395 75992530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75993825 75993932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75995780 75995930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76000389 76000557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76004695 76004910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76005990 76006092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76008502 76008827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2016 nt):
ATGGACCCCGCGGAGAGCCACCATGGCGTCACCTGGAACCAGAGCACCCTGGGCTTAAGTCTCCACAGCA
CCACAGACACACTGGTGATGACGTTCTACCTCTTGCTGGTCGTGTGCGTCGGGCTGTGGATGGGCATTTC
CATTTATTCTTCAAATATTGGCAGCGGCCACTATATGGCCCTGGCTGGCATAGGTGCAGCTTCAGGGATT
GCTGTTGGGGCCCTTGAGTGGAATAGTATATTTATGCTCTTTCTTCTTGGTTGGATATTTGTGCCCATCT
ATAGCAAGGCTGAGGTGGTGACATTGCCAGAATATCTGAAGAAGAGGTTTGGCAGCCTCCGCATCCAGCT
GTTCTTCACTTTCATTTTCTTAATCGTCTATATCTTCAGCAGGATCTCGATGGAGATTGGCTTTGGCGCC
ATGTTCTTGAAAATGGTTTGGGACACTGATATTTACCAGACCATGTTGACCGTGCTGACGATCATCGGCA
TGTATACCATCACAGGTGGCCTGGCCACTGTGGCTTACGTTGAGAGCTTACAAGCTGGTATCATGATTTT
GGGCTCAGCCTTGTTAATGGGTTATGCCTTTTATGAAGTTGGAGGGTATCCGAAGCTGGTGAGTAAGTAC
ATGGAAGCCATCCCAAGCAAGACCCAGCAGGGGAACTGGACTGCCCAGCCAGAGTGCTATCTGCCCCGTC
AGGATGCTTTCCACATCTTCCGAAGCTGTGTCTCTGGAGACATTCCTTGGCCTGGACTCATCTTAGGGGC
CACCACTGTCTCTCTGTTCTACGGGTGTGCCGATCAGGTTTCTGTCCAGCGGTTTCTGGCAGGAAAGAGC
AGGCTTCACATGGAAGGTGGCTGCCTATTGTGCGGCTACTTAAAGCTGCTGCCCATGTTCCTCATGGTGA
TGCCGGGCATGATCAGCCGTATCTTGTACCCAGATCAAGTGGCCTGCGTCGTGCCTTCGGAATGCCAGAA
GTTCTGTGGCCGAGGAACCGGTTGTAGTGCCCTGGCTTACCCAGTGCTGGTCTTAGGAGTGATGCCTCAT
GGCCTGCAAGGCTTTATGCTGTCCACAGTGTGCGCCTCCCTCATGTCTTCCTTGACGTCTATTTTCAACA
GTTCCAGCGCCCTGTTCACGCTGAACATTTATACCTGGATTCGGCCCACGGCCACCGAGAAGGAGCTGAT
GATAGCTGGCAGGTTTTTTGTTATAATCTTGCTCGCCGTCACCATTGTCTGGATCCCCATTATAGAAATG
GCCCCCAATGAGATACTGTTCGAGTACATGCAGGTTCTTAAGAGCTGTCTGACCCCGAGCATGACTGCCG
TCTTTCTGCTGGCTGTCTTTTGCAAGAGGGTGAACGAGCAGGGCGCCTTCTGGGGACTGATTGTGGGAAC
CACAATTGGTGTCTTTCGACTGCTGGCTGAGTTTTTCTATGGCCCGGTGACTTGCGGGAGAGACCGCCAG
TGTCCTATATTCATCTGCGGCCTCCATTACCTCTATTTTGGCTTTTGCCTTTTCTTGGTCACCATTCTGA
TCATACTGGCCATCTCCTTAGCTACGGAACCGATTCCAGATCACCACCTCCATGGTCTCTGCTGGAGTTT
ACGTAACAGCCAACAGAGGAGAGTGGCTTTAGACAAAGAGATGAGATGGAAGGCCTTCCCCAGCTTCACA
TCCCAGCCAGGTATGTTTGGGGAGGCCCACACCTGCCTCTGGAAGTTCTGGGACTTGTTCTGCGGTCTCG
ACTCACAGTCAAAGTGTAAGACAGGCCCGGAGAACGCTACCGAGAAGGAGTTAGAGGACACCTGGAAGAA
GGTTGTATCCAGCGACAGGTCAACGGCCTTTGAGATTCTGGCCAGGAGAATGGCAGCCAGAAAGAGTGAG
GAACACGAGGATAGGATGAAAGACTGGAGCAACGAACCCGAGAGCCTCTTCTGGAAGAGAGTCGTGCAGG
CTAGCGCCATCCTTTTGTTCCTGATTCTCATTGTTGCGCATGTCTATTTTGCCTGA

Translation (671 aa):
MDPAESHHGVTWNQSTLGLSLHSTTDTLVMTFYLLLVVCVGLWMGISIYSSNIGSGHYMALAGIGAASGI
AVGALEWNSIFMLFLLGWIFVPIYSKAEVVTLPEYLKKRFGSLRIQLFFTFIFLIVYIFSRISMEIGFGA
MFLKMVWDTDIYQTMLTVLTIIGMYTITGGLATVAYVESLQAGIMILGSALLMGYAFYEVGGYPKLVSKY
MEAIPSKTQQGNWTAQPECYLPRQDAFHIFRSCVSGDIPWPGLILGATTVSLFYGCADQVSVQRFLAGKS
RLHMEGGCLLCGYLKLLPMFLMVMPGMISRILYPDQVACVVPSECQKFCGRGTGCSALAYPVLVLGVMPH
GLQGFMLSTVCASLMSSLTSIFNSSSALFTLNIYTWIRPTATEKELMIAGRFFVIILLAVTIVWIPIIEM
APNEILFEYMQVLKSCLTPSMTAVFLLAVFCKRVNEQGAFWGLIVGTTIGVFRLLAEFFYGPVTCGRDRQ
CPIFICGLHYLYFGFCLFLVTILIILAISLATEPIPDHHLHGLCWSLRNSQQRRVALDKEMRWKAFPSFT
SQPGMFGEAHTCLWKFWDLFCGLDSQSKCKTGPENATEKELEDTWKKVVSSDRSTAFEILARRMAARKSE
EHEDRMKDWSNEPESLFWKRVVQASAILLFLILIVAHVYFA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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