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Report for CCDS29316.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29316.1 Public Mus musculus 18 Mc4r 23 108 98 CCDS HistoryNCBI Gene:17202Re-query CCDS DB by CCDS ID:29316.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29316.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057942.3 ENSMUSP00000054776.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057942.3Link to Ensembl Protein Viewer:ENSMUSP00000054776.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000057942Re-query CCDS DB by Protein ID:ENSMUSP00000054776
Original member Current member NCBI NM_016977.4 NP_058673.2 Accepted alive Link to Nucleotide Sequence:NM_016977.4Link to Protein Sequence:NP_058673.2Re-query CCDS DB by Nucleotide ID:NM_016977Re-query CCDS DB by Protein ID:NP_058673Link to BLAST:NP_058673.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058673.2 332 P56450 332 100% 0 0

Chromosomal Locations for CCDS 29316.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 66859042 66860040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGAACTCCACCCACCACCATGGCATGTATACTTCCCTCCACCTCTGGAACCGCAGCAGCTACGGGCTGC
ACGGCAATGCCAGCGAGTCGCTGGGGAAGGGCCACCCGGACGGAGGATGCTATGAGCAACTTTTTGTTTC
CCCCGAGGTGTTTGTGACTCTGGGTGTCATAAGCCTGTTGGAGAACATTCTAGTGATCGTGGCGATAGCC
AAGAACAAGAACCTGCACTCACCCATGTACTTTTTCATCTGTAGCCTGGCTGTGGCAGATATGCTGGTGA
GCGTTTCGAATGGGTCGGAAACCATCGTCATTACCCTGTTAAACAGTACGGATACGGATGCCCAGAGCTT
CACCGTGAACATTGATAATGTCATTGACTCTGTGATCTGTAGCTCCTTGCTCGCATCCATTTGCAGCCTG
CTTTCCATTGCGGTGGACAGGTATTTCACTATCTTTTACGCGCTCCAGTACCATAACATCATGACGGTTA
GGCGGGTCGGGATCATCATAAGTTGTATCTGGGCAGCTTGCACTGTGTCAGGCGTCCTCTTCATCATTTA
CTCGGACAGCAGCGCTGTCATCATCTGCCTCATTTCCATGTTCTTCACTATGCTAGTTCTCATGGCCTCT
CTCTATGTCCACATGTTCCTGATGGCGAGGCTTCACATTAAGAGGATTGCTGTCCTCCCAGGCACAGGGA
CCATCCGCCAGGGTACCAACATGAAGGGGGCGATTACCTTGACCATCCTGATTGGAGTCTTTGTTGTCTG
CTGGGCCCCGTTCTTTCTCCATTTACTGTTCTACATCTCTTGCCCTCAGAATCCATACTGCGTGTGCTTC
ATGTCTCATTTTAATTTGTATCTCATACTGATCATGTGTAACGCCGTCATCGACCCTCTCATTTATGCCC
TCCGGAGTCAAGAACTGAGGAAAACTTTCAAAGAGATCATCTGTTTCTATCCTCTGGGAGGCATCTGTGA
GTTGTCTAGCAGGTATTAA

Translation (332 aa):
MNSTHHHGMYTSLHLWNRSSYGLHGNASESLGKGHPDGGCYEQLFVSPEVFVTLGVISLLENILVIVAIA
KNKNLHSPMYFFICSLAVADMLVSVSNGSETIVITLLNSTDTDAQSFTVNIDNVIDSVICSSLLASICSL
LSIAVDRYFTIFYALQYHNIMTVRRVGIIISCIWAACTVSGVLFIIYSDSSAVIICLISMFFTMLVLMAS
LYVHMFLMARLHIKRIAVLPGTGTIRQGTNMKGAITLTILIGVFVVCWAPFFLHLLFYISCPQNPYCVCF
MSHFNLYLILIMCNAVIDPLIYALRSQELRKTFKEIICFYPLGGICELSSRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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