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Report for CCDS37747.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37747.1 Public Mus musculus 18 Mep1b 23 108 98 CCDS HistoryNCBI Gene:17288Re-query CCDS DB by CCDS ID:37747.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37747.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000082235.4 ENSMUSP00000080866.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082235.4Link to Ensembl Protein Viewer:ENSMUSP00000080866.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000082235Re-query CCDS DB by Protein ID:ENSMUSP00000080866
Original member Current member NCBI NM_008586.2 NP_032612.2 Accepted alive Link to Nucleotide Sequence:NM_008586.2Link to Protein Sequence:NP_032612.2Re-query CCDS DB by Nucleotide ID:NM_008586Re-query CCDS DB by Protein ID:NP_032612Link to BLAST:NP_032612.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032612.2 704 Q61847-1 704 100% 0 0

Chromosomal Locations for CCDS 37747.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 21072374 21072436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 21074922 21074940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 21075651 21075701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 21076347 21076387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 21080430 21080508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 21084079 21084196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 21086162 21086340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 21088545 21088763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 21089325 21089477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 21091074 21091289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 21093221 21093664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 21094924 21095103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 21096129 21096261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 21097288 21097492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 21100044 21100058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2115 nt):
ATGGATGCCCGGCATCAGCCTTGGTTTCTGGTTTTTGCCACATTTCTCCTGGTTTCTGGTTTGCCAGCTC
CGGAAAAGTTTGTCAAAGACATAGATGGAGGAATTGACCAAGACATATTTGATATTAACCAAGGTTTGGG
TCTGGACCTTTTTGAGGGAGACATCAAACTCGAGGCAAATGGGAAGAATTCCATCATTGGAGACCACAAG
AGATGGCCACATACCATTCCATATGTTCTAGAGGACAGCTTGGAAATGAATGCTAAAGGAGTTATCCTCA
ATGCTTTTGAGCGCTATCGCCTTAAAACATGCATTGACTTCAAGCCTTGGTCCGGAGAAGCTAACTATAT
CTCAGTGTTCAAGGGCAGTGGGTGCTGGTCTTCAGTGGGAAACATTCATGCTGGGAAGCAGGAGTTGTCC
ATTGGGACAAACTGTGACAGAATAGCAACAGTTCAGCATGAGTTCCTCCACGCCCTGGGATTCTGGCATG
AGCAGTCACGTGCTGACCGGGATGATTACGTCATTATAGTTTGGGACAGGATTCAGCCAGGCAAGGAACA
CAACTTCAACATCTACAATGACAGTGTGTCTGATTCCCTGAATGTCCCATATGACTACACCTCAGTAATG
CACTACAGTAAAACCGCTTTCCAGAACGGGACAGAGTCTACCATCGTCACGAGAATCTCAGAGTTCGAGG
ACGTGATTGGCCAACGAATGGACTTCAGTGACTATGACCTTCTGAAGCTAAATCAGCTGTATAACTGCAC
TTCTTCCTTGAGTTTTATGGACTCCTGTGATTTTGAATTGGAAAATATCTGTGGCATGATCCAAAGTTCG
GGGGATAGTGCTGACTGGCAGCGGGTTTCACAGGTTCTCAGTGGCCCAGAGAGCGACCACTCCAAGATGG
GCCAGTGCAAAGACTCTGGCTTCTTCATGCATTTCAACACTAGCATTTTGAATGAGGGGGCCACGGCGAT
GTTGGAGAGCAGACTGTTGTACCCCAAGAGAGGGTTTCAGTGCTTGGAGTTTTATCTGTACAACAGTGGA
AGTGGAAATGACCAACTGAACATTTACACCCGGGAGTACACTACAGGCCAGCAGGGTGGTGTTTTAACCC
TTCAGAGACAAATAAAAGAGGTACCCATTGGGAGCTGGCAACTTCACTATGTAACACTGCAAGTGACTAA
AAAGTTTCGAGTGGTGTTTGAAGGACTCAGAGGCCCTGGCACGTCATCAGGTGGTCTGTCTATCGATGAC
ATCAATCTCTCAGAAACAAGGTGTCCTCACCATATCTGGCACATACAGAATTTCACACAGATTCTAGGCG
GCCAGGACACATCTGTATACAGTCCTCCATTTTATTCTTCTAAAGGTTACGCTTTTCAGATCTACATGGA
TCTAAGATCCTCAACAAATGTAGGAATTTATTTCCACCTGATCTCCGGTGCCAATGATGATCAATTACAG
TGGCCATGTCCTTGGCAACAAGCTACAATGACACTCTTGGATCAAAATCCTGACATCCGACAGCGTATGT
TCAACCAGCGGAGTATAACCACAGACCCAACGATGACCAGTGATAATGGAAGCTACTTTTGGGACAGGCC
TTCCAAGGTGGGAGTGACGGATGTTTTCCCTAACGGAACTCAGTTTAGCAGAGGTATAGGCTATGGAACG
ACTGTCTTCATAACCCGAGAGAGGCTGAAGAGCAGAGAGTTCATAAAAGGAGATGACATTTACATCTTAC
TGACTGTTGAAGACATATCTCACCTCAATTCTACATCAGCTGTCCCCGACCCAGTCCCCACCTTGGCTGT
CCATAATGCCTGCTCTGAGGTTGTATGTCAGAACGGTGGCATCTGTGTTGTCCAAGATGGCAGAGCTGAG
TGCAAGTGTCCTGCAGGAGAAGACTGGTGGTACATGGGCAAAAGGTGTGAGAAGAGAGGGTCCACCCGAG
ACACTGTTATCATCGCTGTTTCTTCCACGGTCACCGTGTTTGCTGTGATGCTAATCATCACTCTCGTCAG
TGTCTACTGCACCAGGAGGAAATATCGTAAGAAGGCTAGAGCAAATACGGCAGCCATGACTCTAGAAAAC
CAACATGCGTTTTGA

Translation (704 aa):
MDARHQPWFLVFATFLLVSGLPAPEKFVKDIDGGIDQDIFDINQGLGLDLFEGDIKLEANGKNSIIGDHK
RWPHTIPYVLEDSLEMNAKGVILNAFERYRLKTCIDFKPWSGEANYISVFKGSGCWSSVGNIHAGKQELS
IGTNCDRIATVQHEFLHALGFWHEQSRADRDDYVIIVWDRIQPGKEHNFNIYNDSVSDSLNVPYDYTSVM
HYSKTAFQNGTESTIVTRISEFEDVIGQRMDFSDYDLLKLNQLYNCTSSLSFMDSCDFELENICGMIQSS
GDSADWQRVSQVLSGPESDHSKMGQCKDSGFFMHFNTSILNEGATAMLESRLLYPKRGFQCLEFYLYNSG
SGNDQLNIYTREYTTGQQGGVLTLQRQIKEVPIGSWQLHYVTLQVTKKFRVVFEGLRGPGTSSGGLSIDD
INLSETRCPHHIWHIQNFTQILGGQDTSVYSPPFYSSKGYAFQIYMDLRSSTNVGIYFHLISGANDDQLQ
WPCPWQQATMTLLDQNPDIRQRMFNQRSITTDPTMTSDNGSYFWDRPSKVGVTDVFPNGTQFSRGIGYGT
TVFITRERLKSREFIKGDDIYILLTVEDISHLNSTSAVPDPVPTLAVHNACSEVVCQNGGICVVQDGRAE
CKCPAGEDWWYMGKRCEKRGSTRDTVIIAVSSTVTVFAVMLIITLVSVYCTRRKYRKKARANTAAMTLEN
QHAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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